SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58572

Length: 399 nt

UniGene Fasta

>sp_v2.0_unigene58572
CGTCGTGACCTTGGCTGTCACTCAATTTCTGACTGAATGGCCACAAGGAATTCTCAATGGTGTTAACTTAGCAGAAGCATCGCCAGGAATTGAGCATATATCGAGAGGCAATTCTGTGATATCAGAACTGGTTGCAGAACTCAAACCTCGGTACCATATTGCAGGATGTGAAGGTATCTTTTATTCTCGGGAGCCTTATGCAAATAATGGAGCTTCACATGTAACACGTTTTCTTGGACTTGCAGCTGTTGGTAATGACAAGAAAGAGAAGTTTATCCATGCACTTTCACCCGTACCTGCTTCAATGATGCCTGTGTCCGAGCTTTTAGCAAGGCCTCCAAACTCAACACCTTCTCCATATAAAGTTGAGCAACCATCTGTCAGGGCAAAGGATACATT

Ace file of the UniGene sp_v2.0_unigene58572

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] sp\|Q84WU9.1\|C3H64_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 64; Short=AtC3H64 gb\|AAO22569.1\| unknown protein [Arabidopsis thaliana] gb\|AED96821.1\| zinc finger CCCH d	-	-	4.0e-30	51%
FL-Next	sp=Zinc finger CCCH domain-containing protein 59; Oryza sativa subsp. japonica (Rice).	-	-	0.0	54%
Blast2go	zinc finger ccch domain-containing protein 64	-	-	2.07885e-40	71%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Cwf19-like protein, C-terminal domain-2	IPR006767	-	-
Sma3	Cwf19-like, C-terminal domain-1	IPR006768	-	-
Sma3	Histidine triad motif	IPR011151	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q69NK8

Fln msg: Distance to subject end: 319 aas, your sequence is shorter than subject: 132 - 613

Fln protein: VVTLAVTQFLTEWPQGILNGVNLAEASPGIEHISRGNSVISELVAELKPRYHIAGCEGIFYSREPYANNGASHVTRFLGLAAVGNDKKEKFIHALSPVPASMMPVSELLARPPNSTPSPYKVEQPSVRAKDT

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTGACTGAATGGCCACAAGGAATTCTCAATGGTGTTAACTTAGCAGAAGCATCGCCAGGAATTGAGCATATATCGAGAGGCAATTCTGTGATATCAGAACTGGTTGCAGAACTCAAACCTCGGTACCATATTGCAGGATGTGAAGGTATCTTTTATTCTCGGGAGCCTTATGCAAATAATGGAGCTTCACATGTAACACGTTTTCTTGGACTTGCAGCTGTTGGTAATGACAAGAAAGAGAAGTTTATCCATGCACTTTCACCCGTACCTGCTTCAATGATGCCTGTGTCCGAGCTTTTAGCAAGGCCTCCAAACTCAACACCTTCTCCATATAAAGTTGAGCAACCATCTGTCAGGGCAAAGGATACATT

Fln Alignment:

AllPineV4_c59150___VTQFLT-EWPQGILNGVNLAEASPGIEHISRGNSVISELVAELKPRYHIAGCEGIFYSREPYANNGASHVTRFLGLAAVGNDKKEKFIHALSPVPASMMPVSELLARPPNSTPSPYKVEQPSVRAKDT
Q69NK8_______________VDLFLTNEWPAGVVNGVDTSNAPSQISDPHGYDPVVAELVAEIKPRYHIAGSKGVFYAREPYVSDSAAHVTRFIGLANVGNKEKQKFIHAISPTPASTMSSVDIHARPPNTTLSPYISPAKSVPVEET

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
265	66			33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain