SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58534

Length: 274 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58534
GAACAAAGAGAACAAGAGATCAAGGAGGAATGTACTTTGAGCTTAAGAAGCGTACCAATGAGGCAGCCTCCAAAGTTGCTGTCATTTTGAAAAAGTCTGAAGAGCAATCGAGTATGATCGAGTCACTCCAGGGCACTGTGGGAATGTATAAGAGGCTTTATGAGGAAGAGATCAGAAATCGATCTTTCTTTCAGTATCCTACGGAAGGTTCTCCAGGTGAGGGCAGGAATGATCTTCGGAAGCTTGTGGAAATTTCTCAGGAAACTACTACATT

Ace file of the UniGene sp_v2.0_unigene58534 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleoprotein TPR [Arabidopsis thaliana] sp\|A4GSN8.1\|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb\|ABO21684.1\| nuclear-pore anchor [Arabidopsis thaliana] gb\|AEE36226.1\| nucleoprotein TPR [A	-	-	1.0e-10	48%
FL-Next	sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	nucleoprotein tpr	-	-	4.30886e-18	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	4.30886e-18	69%
Blast2go	negative regulation of protein sumoylation	GO:0033234	Biological Process	4.30886e-18	69%
Blast2go	stamen development	GO:0048443	Biological Process	4.30886e-18	69%
Blast2go	poly(A)+ mRNA export from nucleus	GO:0016973	Biological Process	4.30886e-18	69%
Blast2go	protein binding	GO:0005515	Molecular Function	4.30886e-18	69%
Blast2go	cytosol	GO:0005829	Cellular Component	4.30886e-18	69%
Blast2go	nucleolus	GO:0005730	Cellular Component	4.30886e-18	69%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	4.30886e-18	69%
Blast2go	chloroplast	GO:0009507	Cellular Component	4.30886e-18	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetratricopeptide, MLP1/MLP2-like	IPR012929	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A4GSN8

Fln msg: Distance to subject end: 1407 aas, your sequence is shorter than subject: 90 - 2093

Fln protein: TKRTRDQGGMYFELKKRTNEAASKVAVILKKSEEQSSMIESLQGTVGMYKRLYEEEIRNRSFFQYPTEGSPGEGRNDLRKLVEISQETTT

Protein Length: 91

Fln nts: GAACAAAGAGAACAAGAGATCAAGGAGGAATGTACTTTGAGCTTAAGAAGCGTACCAATGAGGCAGCCTCCAAAGTTGCTGTCATTTTGAAAAAGTCTGAAGAGCAATCGAGTATGATCGAGTCACTCCAGGGCACTGTGGGAATGTATAAGAGGCTTTATGAGGAAGAGATCAGAAATCGATCTTTCTTTCAGTATCCTACGGAAGGTTCTCCAGGTGAGGGCAGGAATGATCTTCGGAAGCTTGTGGAAATTTCTCAGGAAACTACTACATT

Fln Alignment:

AllPineV4_c59105___ELKKRTNEAASKVAVILKKSEEQSSMIESLQGTVGMYKRLYEEEIRNRSFFQYPTEGSPG--EGRNDLRKLVEISQETT
A4GSN8_______________DLKNKTDEASAKVATVLKRAEEQGQMIESLHTSVAMYKRLYEEEQKLHSSDSRSSDLSPAVVPGRKNFLHLLEDSEEAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain