SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58508

Length: 406 nt

UniGene Fasta

>sp_v2.0_unigene58508
AATGTACAATCATTGTTGGAGAGACTGGAAGTGGGAAATCCACTCAAATTCCGCATTACCTCAAAGAGGCTGGTTGGGCTGAGGGTGGTCGATTAATAGCTTGCACCCAACCGAGGCGATTAGCTGTTCAGACAGTTGCTTCAAGGGTGGCAGAGGAGATGGATGTAAAGGTTGGTGCAGAAGTTGGATACTCAATTCGTTTTGAGGATGTGACAACTCCGGGCGTGACAATGGTCAAGTTCCTTACAGATGGTGTCTTATTGAGAGAAATGATGGAGGATCCTTTGTGAGCAAATATAGTGTTATAATGGTTGATGAGGCACATGAGCGAAGTATCTCCACTGACATGCTCTTAGGGCTCTTGAAGAGATTCAGCGTCGAAGGCCAGGACTGCGCCTGATTATTT

Ace file of the UniGene sp_v2.0_unigene58508

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA helicase - like protein [Arabidopsis thaliana] emb\|CAB78848.1\| RNA helicase-like protein [Arabidopsis thaliana]	-	-	84%
FL-Next	sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	helicase activity	GO:0004386	Molecular Function	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22899

Fln msg: Overlapping hits, possible frame ERROR between 287 and 287, Unexpected STOP codon at 3' end. Distance to subject end: 508 aas, your sequence is shorter than subject: 133 - 729

Fln protein: CTIIVGETGSGKSTQIPHYLKEAGWAEGGRLIACTQPRRLAVQTVASRVAEEMDVKVGAEVGYSIRFEDVTTPGVTMVKFLTDGVLLREMMEDPxxSKYSVIMVDEAHERSISTDMLLGLLKRFSVEGQDCA*

Protein Length: 134

Fln nts: AATGTACAATCATTGTTGGAGAGACTGGAAGTGGGAAATCCACTCAAATTCCGCATTACCTCAAAGAGGCTGGTTGGGCTGAGGGTGGTCGATTAATAGCTTGCACCCAACCGAGGCGATTAGCTGTTCAGACAGTTGCTTCAAGGGTGGCAGAGGAGATGGATGTAAAGGTTGGTGCAGAAGTTGGATACTCAATTCGTTTTGAGGATGTGACAACTCCGGGCGTGACAATGGTCAAGTTCCTTACAGATGGTGTCTTATTGAGAGAAATGATGGAGGATCCTxxxxxxAGCAAATATAGTGTTATAATGGTTGATGAGGCACATGAGCGAAGTATCTCCACTGACATGCTCTTAGGGCTCTTGAAGAGATTCAGCGTCGAAGGCCAGGACTGCGCCTGATTATTT

Fln Alignment:

AllPineV4_c59072___IIVGETGSGKSTQIPHYLKEAGWAEG---GR--LIACTQPRRLAVQTVASRVAEEMDVKVGAEVGYSIRFEDVTTPGVTMVKFLTDGVLLREMMEDPLVSKYSVIMVDEAHERSISTDMLLGLLK
O22899_______________ILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTS-SRTMLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain