SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58414

Length: 274 nt

UniGene Fasta

>sp_v2.0_unigene58414
ATCACTATCAGGTGATCCTAATGACACTAGTTGCAATCAGGTCAAATACAGGCAACAATGAAGTTTATGAAATTGGGAGTGTAACCAGACACCTTCTACACCGAAGAAGCTGCCAGGTCAGTCTCTACAGAAGTATCTAGCGATTTCATTATACAAGTAAATGGTGCGAAGTATCTTTTACACAAGTTTCCTCTGCTTTCAAAGTGCGGCCTATTACAGAGGTTAGCTGCAGAGTCTTGTGATTCCGAGAATGATATAATTAAGCTCCATGATT

Ace file of the UniGene sp_v2.0_unigene58414

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phototropic-responsive NPH3-like protein [Arabidopsis thaliana] ref\|NP_974103.1\| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] ref\|NP_001185347.1\| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] sp\|Q9C9V6.1\|Y1790_ARATH Re	-	-	8.0e-17	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	btb poz domain-containing protein	-	-	1.45331e-25	78%

Source	InterPros	Term	Type	Identity
Sma3	NPH3	IPR004249	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	BTB/POZ fold	IPR011333	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 576 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 63 - 648

Fln protein: PDTFYTEEAARSVSTEVSSDFIIQVNGAKYLLHKFPLLSKCGLLQRLAAESCDSENDIIKLHD

Protein Length: 64

Fln nts: ATCACTATCAGGTGATCCTAATGACACTAGTTGCAATCAGGTCAAATACAGGCAACAATGAAGTTTATGAAATTGGGAGTGTAACCAGACACCTTCTACACCGAAGAAGCTGCCAGGTCAGTCTCTACAGAAGTATCTAGCGATTTCATTATACAAGTAAATGGTGCGAAGTATCTTTTACACAAGTTTCCTCTGCTTTCAAAGTGCGGCCTATTACAGAGGTTAGCTGCAGAGTCTTGTGATTCCGAGAATGATATAATTAAGCTCCATGATT

Fln Alignment:

AllPineV4_c58964___MKFMKLGV*PDTFYTEEAARSVSTEVSSDFIIQVNGAKYLLHKFPLLSKCGLLQRLAAESCDSEND
B8LPD8_______________MALEKLGSKPDGFQRRGQAWFCTTGLPSDIIIEVEEMFFHLHKFPLISRSGKLSRLISQTPDDDDE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain