SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58403

Length: 353 nt

UniGene Fasta

>sp_v2.0_unigene58403
TTGGAAGGACTGGACAAAGGGGCCCCAAAGCAGCTGAAGCTTAAGACCAGGAGTGTCAATCCAGTCAATACCATTTGTTACATACAGATTCTGGGGACTGGGATGGATACGCAAGATACATCCCCATCCGTTCTGCTGTTTTTTGATCAACAGCGCTTCATATTCAATGCTGGAGAGGGGCTGCAACGCTTCTCTGCTGAACACAAATTCAAGCTGTCAAGATTAGATCACATATTTCTTACACGGGTTTGCTCAGAAACTGCAGGTGGCATTCCAGGTCTTCTCCTGACGATGGCTGGCATAGGGGATGATGGAATGACAGTTAACATCTGGGGTCCATCAGATTTAGAATT

Ace file of the UniGene sp_v2.0_unigene58403

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tRNAse Z4 [Arabidopsis thaliana] gb\|AEE75791.1\| tRNAse Z4 [Arabidopsis thaliana]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	79%
Blast2go	zinc phosphodiesterase elac protein 2-like	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	tRNA 3'-end processing	GO:0042780	Biological Process	0.0	88%
Blast2go	3'-tRNA processing endoribonuclease activity	GO:0042781	Molecular Function	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	VHS	IPR002014	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HYC8

Fln msg: Distance to subject end: 782 aas, your sequence is shorter than subject: 117 - 918

Fln protein: LEGLDKGAPKQLKLKTRSVNPVNTICYIQILGTGMDTQDTSPSVLLFFDQQRFIFNAGEGLQRFSAEHKFKLSRLDHIFLTRVCSETAGGIPGLLLTMAGIGDDGMTVNIWGPSDLE

Protein Length: 118

Fln nts: TTGGAAGGACTGGACAAAGGGGCCCCAAAGCAGCTGAAGCTTAAGACCAGGAGTGTCAATCCAGTCAATACCATTTGTTACATACAGATTCTGGGGACTGGGATGGATACGCAAGATACATCCCCATCCGTTCTGCTGTTTTTTGATCAACAGCGCTTCATATTCAATGCTGGAGAGGGGCTGCAACGCTTCTCTGCTGAACACAAATTCAAGCTGTCAAGATTAGATCACATATTTCTTACACGGGTTTGCTCAGAAACTGCAGGTGGCATTCCAGGTCTTCTCCTGACGATGGCTGGCATAGGGGATGATGGAATGACAGTTAACATCTGGGGTCCATCAGATTTAGAATT

Fln Alignment:

AllPineV4_c58953___EGLDKG-APKQLKLKTRSVNPVNTICYIQILGTGMDTQDTSPSVLLFFDQQRFIFNAGEGLQRFSAEHKFKLSRLDHIFLTRVCSETAGGIPGLLLTMAGIGDDGMTVNIWGPSDLE
F6HYC8_______________EGRDKNDRPKTLQLKARKLNPVNTICYVQILGTGMDTQDTSSSVLLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLSRVCSETAGGLPGLLLTLAGMGDEGMSVNIWGPSDLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain