SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58332

Length: 288 nt

UniGene Fasta

>sp_v2.0_unigene58332
AATGTATTATGGTTTGCTTTCTCATGGCTACTGGATCAGTTGCCAAAATTGTGTCCTATTAATCGCTCGACTGATCTTGCTGTTCTCAAGGACAAGTTTGAGTCACCAACTGGCGACAATCCAACAGGGAGATCAGACTTGCCTGGTATCGATGTTTTTGTCTCCACTGCTGATCCAGAGAAAGAGCCACCACTGGTCACTGCAAACACAATCCTGTCAATCCTTTCTGCTGATTACCCAGTGGAGAAGCTTGCCTGCTATGTGTCAGATGATGGAGGAGCTCTTCTC

Ace file of the UniGene sp_v2.0_unigene58332

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cellulose synthase-like protein D4 [Populus tremuloides]	-	-	6.02558e-44	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	cellulose synthase-like protein	-	-	0.0	95%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKJ9

Fln msg: Distance to subject end: 241 aas, your sequence is shorter than subject: 96 - 546

Fln protein: NVLWFAFSWLLDQLPKLCPINRSTDLAVLKDKFESPTGDNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILSADYPVEKLACYVSDDGGALL

Protein Length: 97

Fln nts: AATGTATTATGGTTTGCTTTCTCATGGCTACTGGATCAGTTGCCAAAATTGTGTCCTATTAATCGCTCGACTGATCTTGCTGTTCTCAAGGACAAGTTTGAGTCACCAACTGGCGACAATCCAACAGGGAGATCAGACTTGCCTGGTATCGATGTTTTTGTCTCCACTGCTGATCCAGAGAAAGAGCCACCACTGGTCACTGCAAACACAATCCTGTCAATCCTTTCTGCTGATTACCCAGTGGAGAAGCTTGCCTGCTATGTGTCAGATGATGGAGGAGCTCTTCTC

Fln Alignment:

AllPineV4_c58873___LWFAFSWLLDQLPKLCPINRSTDLAVLKDKFESPTGDNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILSADYPVEKLACYVSDDGGALL
B8LKJ9_______________IWFALSWILDQFPKWSPINRETFIDRLSLRFERPGEP-----CELAAVDFFVSTVDPLKEPPLVTANTVLSILAVDYPVEKVSCYVSDDGAAML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain