SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58330

Length: 293 nt

UniGene Fasta

>sp_v2.0_unigene58330
AATGTTGCTTCTGCATTGCCTCGGAAGTCGATGACGGCATCGGAGTCCTTACCGCGTGGAGGAAATGAATTGGTGGATCCTTTAGGCATCGGGGTTATCGATTTAAAGTCCTTAACATTAGTAAGTGACAATGCCGTTACTTCACCATCACAGAAGGAAATTTCTACACCTCGAGATCCTGGTTTAAGAGAGAAGATTATGTACCATTCGGAAAAATTTGATGCAAAATGTTTCTTATCTCGTATCCACCAAATACAAGTGCAGCAGACCTGGAGTCTGGTGCGCTATCCTTG

Ace file of the UniGene sp_v2.0_unigene58330

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	exocyst complex component 2 [Arabidopsis thaliana] sp\|Q8S3U9.1\|EXOC2_ARATH RecName: Full=Exocyst complex component 2; AltName: Full=Exocyst complex component Sec5 gb\|AAL87121.1\|AF479278_1 SEC5a [Arabidopsis thaliana] dbj\|BAC43143.1\| unknown protein [Arabi	-	-	2.0e-09	49%
FL-Next	sp=Exocyst complex component 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%
Blast2go	exocyst complex component 2-like	-	-	6.75754e-17	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	6.75754e-17	72%
Blast2go	pollen tube growth	GO:0009860	Biological Process	6.75754e-17	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	6.75754e-17	72%
Blast2go	cytosol	GO:0005829	Cellular Component	6.75754e-17	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8S3U9

Fln msg: Distance to subject end: 833 aas, your sequence is shorter than subject: 97 - 1090

Fln protein: NVASALPRKSMTASESLPRGGNELVDPLGIGVIDLKSLTLVSDNAVTSPSQKEISTPRDPGLREKIMYHSEKFDAKCFLSRIHQIQVQQTWSLVRYP

Protein Length: 98

Fln nts: AATGTTGCTTCTGCATTGCCTCGGAAGTCGATGACGGCATCGGAGTCCTTACCGCGTGGAGGAAATGAATTGGTGGATCCTTTAGGCATCGGGGTTATCGATTTAAAGTCCTTAACATTAGTAAGTGACAATGCCGTTACTTCACCATCACAGAAGGAAATTTCTACACCTCGAGATCCTGGTTTAAGAGAGAAGATTATGTACCATTCGGAAAAATTTGATGCAAAATGTTTCTTATCTCGTATCCACCAAATACAAGTGCAGCAGACCTGGAGTCTGGTGCGCTATCCTTG

Fln Alignment:

AllPineV4_c58871___SMTASESLPRGGNELVDPLGIGVIDLKSLTLVSDNAVTSPSQKEISTPRDPGLREKIMYHSEKFDAKCFLSRIHQ
Q8S3U9_______________ALTSLQSLPRG-MECIDPLKLGIIDNKTLRLITESS-GSPSKAE---KVDNTLREKLVYFSDHFDPKLFLSRIHQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain