SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58274

Length: 289 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58274
AGATGGTGGCTGTGAAAAGAGCGAGGAAAGAGTCTAACCAAGGTGTTGCAGAATTTAAGACGGAACTAGAAATGTTGTCTCGGGTTCATCATAAGAATCTGCTGGGACTGATTGGATTTTGTTTCGAGCCAGGCTCGGAGCAAATGCTTGTGTACGAGTACATGCCAAATGGATCACTCAGAGATAGTCTCTCGGGTAAAACTGGAATTCGTCTTAATTGGTGGAAGAGGTTTTGTATTGCACTGGGGTCAGCGAGGGGATTGGCGTATCTTCACGAGCATGCAACATT

Ace file of the UniGene sp_v2.0_unigene58274 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] dbj\|BAC42504.1\| unknown protein [Arabidopsis thaliana] gb\|ACN59279.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEE36273.1\| leucine-rich repeat protein	-	-	2.0e-31	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	probable leucine-rich repeat receptor-like protein kinase at5g49770-like	-	-	4.60879e-38	87%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9B2

Fln msg: Distance to subject end: 168 aas, your sequence is shorter than subject: 95 - 338

Fln protein: MVAVKRARKESNQGVAEFKTELEMLSRVHHKNLLGLIGFCFEPGSEQMLVYEYMPNGSLRDSLSGKTGIRLNWWKRFCIALGSARGLAYLHEHAT

Protein Length: 96

Fln nts: AGATGGTGGCTGTGAAAAGAGCGAGGAAAGAGTCTAACCAAGGTGTTGCAGAATTTAAGACGGAACTAGAAATGTTGTCTCGGGTTCATCATAAGAATCTGCTGGGACTGATTGGATTTTGTTTCGAGCCAGGCTCGGAGCAAATGCTTGTGTACGAGTACATGCCAAATGGATCACTCAGAGATAGTCTCTCGGGTAAAACTGGAATTCGTCTTAATTGGTGGAAGAGGTTTTGTATTGCACTGGGGTCAGCGAGGGGATTGGCGTATCTTCACGAGCATGCAACATT

Fln Alignment:

AllPineV4_c58806___MVAVKRARKESNQGVAEFKTELEMLSRVHHKNLLGLIGFCFEPGSEQMLVYEYMPNGSLRDSLSGKTGIRLNWWKRFCIALGSARGLAYLH
D5A9B2_______________VVAIKRGEQGSMLWKVGFRSEIELLSRFHHNNVLDLIGFCVERG-ERMLVYNYIPNGSVNDILLGKKEIQLDWGSRVRIALGSARALEYLH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain