SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58265

Length: 376 nt

UniGene Fasta

>sp_v2.0_unigene58265
GCTGAACCTATTGCATCTCTGGTGGATACTGCATTCATCGGTCAGATAGGTCCTGTGGAGTTGGCAGATGTTGGAGTTTCCATTTCAATCTTCAATATTGTGTCAAAATTGTTTAATATCCCTCTACTCAATGTGACTACTTCATTTGTGGCGGAAGATGAGGCTACACGAGGTGGTAGAGTGAAAGCACTTGGAAAACAGGCTTACAGTGTACAAGGAGATCATTATGATAGAGCCAAAACAGGTAACAGTAGCCTGGAACACAAGGATGAGCTCCAAGGATCATCAGATGATGGAAATTACAAGTTGCAGTTACCTGCAGTTTCAACTGCATTAGTTATAGCAGCTGGTCTTGGGGTTGCAGAAGCAGCTGCAT

Ace file of the UniGene sp_v2.0_unigene58265

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MATE efflux family protein [Arabidopsis thaliana] sp\|Q84K71.1\|MATE2_ARATH RecName: Full=MATE efflux family protein 2, chloroplastic; AltName: Full=Protein DTX44; Flags: Precursor gb\|AAO42040.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63941.1\| unknown	-	-	8.0e-17	76%
FL-Next	sp=MATE efflux family protein 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Blast2go	protein	-	-	3.3396e-21	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	transporter activity	GO:0005215	Molecular Function	3.3396e-21	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	0.0	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84K71

Fln msg: Distance to subject end: 304 aas, your sequence is shorter than subject: 125 - 521

Fln protein: AEPIASLVDTAFIGQIGPVELADVGVSISIFNIVSKLFNIPLLNVTTSFVAEDEATRGGRVKALGKQAYSVQGDHYDRAKTGNSSLEHKDELQGSSDDGNYKLQLPAVSTALVIAAGLGVAEAAA

Protein Length: 126

Fln nts: GCTGAACCTATTGCATCTCTGGTGGATACTGCATTCATCGGTCAGATAGGTCCTGTGGAGTTGGCAGATGTTGGAGTTTCCATTTCAATCTTCAATATTGTGTCAAAATTGTTTAATATCCCTCTACTCAATGTGACTACTTCATTTGTGGCGGAAGATGAGGCTACACGAGGTGGTAGAGTGAAAGCACTTGGAAAACAGGCTTACAGTGTACAAGGAGATCATTATGATAGAGCCAAAACAGGTAACAGTAGCCTGGAACACAAGGATGAGCTCCAAGGATCATCAGATGATGGAAATTACAAGTTGCAGTTACCTGCAGTTTCAACTGCATTAGTTATAGCAGCTGGTCTTGGGGTTGCAGAAGCAGCTGCAT

Fln Alignment:

AllPineV4_c58792___AEPIASLVDTAFIGQIGPVELADVGVSISIFNIVSKLFNIPLLNVTTSFVAEDEA
Q84K71_______________ADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVPLLNVTTSFVAEEQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain