SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58252

Length: 230 nt

UniGene Fasta

>sp_v2.0_unigene58252
AATGTCTTTCCAATAATCAACTTAGCGGTCAAGTTCCTGATGAGATTGGGGATCTTAGAAGCTTGGATGAGTTGAACTTATCCAATAATTTTCTCCAAGGACAGCTGCCATTGAGTGCTTCCAAATGGCGTTGGATCTCTTTTGTGGGAAATCCCGGACTCTGCGGAAAGCCATTGGATCCCTGCTCACAGGCTTCTCTGGAATCTTCAAGGTCTAGAAGGAATCAACTG

Ace file of the UniGene sp_v2.0_unigene58252

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR receptor-like serine/threonine-protein kinase GSO2 n=3 Tax=Arabidopsis RepID=GSO2_ARATH	-	-	3.0e-13	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	serine-threonine protein plant-	-	-	6.56351e-16	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development	GO:0009790	Biological Process	6.56351e-16	65%
Blast2go	embryo sac development	GO:0009553	Biological Process	6.56351e-16	65%
Blast2go	epidermis development	GO:0008544	Biological Process	6.56351e-16	65%
Blast2go	catalytic activity	GO:0003824	Molecular Function	6.56351e-16	65%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP80

Fln msg: Distance to subject end: 359 aas, your sequence is shorter than subject: 76 - 657

Fln protein: CLSNNQLSGQVPDEIGDLRSLDELNLSNNFLQGQLPLSASKWRWISFVGNPGLCGKPLDPCSQASLESSRSRRNQL

Protein Length: 77

Fln nts: AATGTCTTTCCAATAATCAACTTAGCGGTCAAGTTCCTGATGAGATTGGGGATCTTAGAAGCTTGGATGAGTTGAACTTATCCAATAATTTTCTCCAAGGACAGCTGCCATTGAGTGCTTCCAAATGGCGTTGGATCTCTTTTGTGGGAAATCCCGGACTCTGCGGAAAGCCATTGGATCCCTGCTCACAGGCTTCTCTGGAATCTTCAAGGTCTAGAAGGAATCAACTG

Fln Alignment:

AllPineV4_c58778___LSNNQLSGQVPDEIGDLRSLDELNLSNNFLQGQLPLSASKWRWISFVGN-PGLCGKPLDPCSQASLESSRSR
B8LP80_______________LSNNSFSGTIPEALANL-SLSVLNFSHNNLTGAIPNFAQNFSQDAFVGNSPALCGAPLQACGKARQIGHRPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain