SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58087

Length: 310 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58087
GCGACTACTTCCGCCAGGTGTTTGGCGACGTTTATGGCGACATGGCCATTTTACTTCAAGAAGGAGAGACGTCGAGGCAATTAAGGGCAACTGCGTCCACGATTTTTGCCGCCGCCAAAACGCGCAATGACGTTATTCAGACCACTTTGAGGTTAGTACACCAGAGACTTATTCCACTGTTCCAGCGCGCGGCTAAAGAGGGCATTGTTCTTGACCTCCAGGAAGTTTTTCATCGCTACACCTTCGACAGCATCTCTAATTTCGCCCTCGGATTCGATCCGGGATCCCTGAGCGTGGACCTCGCAACATT

Ace file of the UniGene sp_v2.0_unigene58087 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SCQ6_RICCO	-	-	7.0e-12	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	cytochrome p450 86b1	-	-	7.36755e-14	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	suberin biosynthetic process	GO:0010345	Biological Process	7.36755e-14	55%
Blast2go	very long-chain fatty acid biosynthetic process	GO:0042761	Biological Process	7.36755e-14	55%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	7.36755e-14	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLC1

Fln msg: Distance to subject end: 310 aas, your sequence is shorter than subject: 102 - 528

Fln protein: DYFRQVFGDVYGDMAILLQEGETSRQLRATASTIFAAAKTRNDVIQTTLRLVHQRLIPLFQRAAKEGIVLDLQEVFHRYTFDSISNFALGFDPGSLSVDLAT

Protein Length: 103

Fln nts: GCGACTACTTCCGCCAGGTGTTTGGCGACGTTTATGGCGACATGGCCATTTTACTTCAAGAAGGAGAGACGTCGAGGCAATTAAGGGCAACTGCGTCCACGATTTTTGCCGCCGCCAAAACGCGCAATGACGTTATTCAGACCACTTTGAGGTTAGTACACCAGAGACTTATTCCACTGTTCCAGCGCGCGGCTAAAGAGGGCATTGTTCTTGACCTCCAGGAAGTTTTTCATCGCTACACCTTCGACAGCATCTCTAATTTCGCCCTCGGATTCGATCCGGGATCCCTGAGCGTGGACCTCGCAACATT

Fln Alignment:

AllPineV4_c58581___FRQVFGDVYGDMAILLQEGETSRQLRATASTIFAAAKTRNDVIQTTLRLVHQRLIPLFQRAAKEGIVLDLQEVFHRYTFDSISNFALGFDPGSLSVDL
B8LLC1_______________FTRAFRDFLGD-GILNADGHFWASQRKTAVSEFNSSTSLGHAIESLQESVRGRLIPILADACSSCRIIDLQDVFMRFTFDNICNRAFGVEPCCLSPSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain