SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58076

Length: 362 nt

UniGene Fasta

>sp_v2.0_unigene58076
AATGTCTCTTTGAAGAAATGTTGTCCGTGAGCATGAAACCAAATCAGAGTACCTTCGTTGGTGTCCTATCTGCTTGCAGCCGCACAGGCCTGGTCGAGGAAGGCTGTTATTACTTCCATTCAATGAGTCAATGTCATTCAATCAAAGCAGGACCAGAGCACTATGCTTGCATGGTTGACATTCTTGGCCGTGCAGGACGTCTACATGAGGCAAAAGATCTAATCAAAAGCATGCCATTTGAACCTGATGCTCTCATTTGGGGGGCATTGCTTGGTGCATGCAGAATTCATGGCAACATGGATCTAGGACAGCTTGCAGCAGAACAGCTTTTTGAGTTGGAACCACAAACTTCTTCGACTTAC

Ace file of the UniGene sp_v2.0_unigene58076

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	pentatricopeptide repeat-containing protein at4g02750-like	-	-	1.2962e-42	74%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 166 aas, your sequence is shorter than subject: 120 - 370

Fln protein: CLFEEMLSVSMKPNQSTFVGVLSACSRTGLVEEGCYYFHSMSQCHSIKAGPEHYACMVDILGRAGRLHEAKDLIKSMPFEPDALIWGALLGACRIHGNMDLGQLAAEQLFELEPQTSSTY

Protein Length: 121

Fln nts: AATGTCTCTTTGAAGAAATGTTGTCCGTGAGCATGAAACCAAATCAGAGTACCTTCGTTGGTGTCCTATCTGCTTGCAGCCGCACAGGCCTGGTCGAGGAAGGCTGTTATTACTTCCATTCAATGAGTCAATGTCATTCAATCAAAGCAGGACCAGAGCACTATGCTTGCATGGTTGACATTCTTGGCCGTGCAGGACGTCTACATGAGGCAAAAGATCTAATCAAAAGCATGCCATTTGAACCTGATGCTCTCATTTGGGGGGCATTGCTTGGTGCATGCAGAATTCATGGCAACATGGATCTAGGACAGCTTGCAGCAGAACAGCTTTTTGAGTTGGAACCACAAACTTCTTCGACTTAC

Fln Alignment:

AllPineV4_c58569___LFEEMLSVSMKPNQSTFVGVLSACSRTGLVEEGCYYFHSMSQCHSIKAGPEHYACMVDILGRAGRLHEAKDLIKSMPFEPDALIWGALLGACRIHGNMDLGQLAAEQLFELEPQTSSTY
A9P0W0_______________LFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain