SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58056

Length: 196 nt

UniGene Fasta

>sp_v2.0_unigene58056
TGTAGTCTCATGGAATGCTCTAATTTCTGGATATAGTCCAGAATGGACTTGCCAACGATGCTTTGGCAGTTTTGATCAAATGCAACTGACTGATGTTAAACCCAATGGCACTACCATGGTGTGCATACTCCCGGCTTGTGCGCAATTAGAGGATCTTGAACAGGTAGGCGGATCCATGATTATGTAATTCAAAATG

Ace file of the UniGene sp_v2.0_unigene58056

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RGS8_RICCO	-	-	6.0e-07	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	pentatricopeptide repeat-containing	-	-	9.70547e-10	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 227 aas, your sequence is shorter than subject: 62 - 644

Fln protein: VVSWNALISGYSPEWTCQRCFGSFDQMQLTDVKPNGTTMVCILPACAQLEDLEQVGGSMIM*

Protein Length: 63

Fln nts: TGTAGTCTCATGGAATGCTCTAATTTCTGGATATAGTCCAGAATGGACTTGCCAACGATGCTTTGGCAGTTTTGATCAAATGCAACTGACTGATGTTAAACCCAATGGCACTACCATGGTGTGCATACTCCCGGCTTGTGCGCAATTAGAGGATCTTGAACAGGTAGGCGGATCCATGATTATGTAATTCAAAATG

Fln Alignment:

AllPineV4_c58548___VVSWNALISGYSPEWTCQRCFGSFDQMQLTDVKPNGTTMVCILPACAQLEDLEQ
B8LLJ0_______________VVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain