SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58047

Length: 308 nt

UniGene Fasta

>sp_v2.0_unigene58047
TGCAGCAGTCTGGGATGAAACCAGATCACATATTCTTTGTTGCTCTTCTGTCTGCATGTAGCCATTCTGGGCTGGTAGCTGAAGGTTGGCAATACTTCCATGCAATGAGAAAAGATTATGGCATCACTCCAAGAATGGAACACTATGCATGCATGGTTGATCTACTTGGTCGGGCTGGGTGCCTAGATGAAGCAGAGGAATTCATTAAGAATATGCCTCTTGAACCCAGTGCTGCTGTGTGGGGTACTATGCTTGGTGCATGCCGAATTCACTCCAATATCGGGATTGGAGAACGTGTGGCAGAATGT

Ace file of the UniGene sp_v2.0_unigene58047

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	at1g74600-like protein	-	-	4.09319e-42	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 178 aas, your sequence is shorter than subject: 102 - 312

Fln protein: QQSGMKPDHIFFVALLSACSHSGLVAEGWQYFHAMRKDYGITPRMEHYACMVDLLGRAGCLDEAEEFIKNMPLEPSAAVWGTMLGACRIHSNIGIGERVAEC

Protein Length: 103

Fln nts: TGCAGCAGTCTGGGATGAAACCAGATCACATATTCTTTGTTGCTCTTCTGTCTGCATGTAGCCATTCTGGGCTGGTAGCTGAAGGTTGGCAATACTTCCATGCAATGAGAAAAGATTATGGCATCACTCCAAGAATGGAACACTATGCATGCATGGTTGATCTACTTGGTCGGGCTGGGTGCCTAGATGAAGCAGAGGAATTCATTAAGAATATGCCTCTTGAACCCAGTGCTGCTGTGTGGGGTACTATGCTTGGTGCATGCCGAATTCACTCCAATATCGGGATTGGAGAACGTGTGGCAGAATGT

Fln Alignment:

AllPineV4_c58538___QQSGMKPDHIFFVALLSACSHSGLVAEGWQYFHAMRKDYGITPRMEHYACMVDLLGRAGCLDEAEEFIKNMPLEPSAAVWGTMLGACRIHSNIGIGERVAE
D5ADG9_______________QQRGVKPNEITFISVLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain