SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58015

Length: 445 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene58015
CCGGAGCTTTACGGCAGACGGGGCTATTTATTTGAACTCCACAGGCGACAATCCATCCATCCATCCCCAGTGGCAGCCAGAGTCTTTTGGACATGCAATCATAGTGAACGGCAAGGTATGGCCTTACATGAAGGTAAAGAGAACAAAATACAGATTCAGAATCGTGAATGCCAACAACGCTCGCTTCTGCAATTTCGCCTTGAGCAACGGCCTGAGCATGACTTTTGTAGGCTCCGATTCGGCATACTTACCAGCGCCCGTAACCGTGAAACAATTCCTGCTTTCTCCTTCCGAGATCGCAGACATCGTTGTAGATTTCAACGATTCGGCAACAGAGGAGGCGATATTAACAAACGACGCACCCTATCCATACCCCTCAGGAAGTCCCGTGGACGAGCTGAACAGCAAGGTCATGAAATTCCTCATCGAAACAACCATGATGGGC

Ace file of the UniGene sp_v2.0_unigene58015

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Low-phosphate root 1 n=6 Tax=Arabidopsis RepID=A5X8Y8_ARATH	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	spore coat protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on diphenols and related substances as donors, With oxygen as acceptor.	EC:1.10.3.-	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Betalain biosynthesis	00965	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	77%
Blast2go	auxin polar transport	GO:0009926	Biological Process	77%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	77%
Blast2go	meristem maintenance	GO:0010073	Biological Process	77%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	77%
Blast2go	indeterminate inflorescence morphogenesis	GO:0048283	Biological Process	77%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	77%
Blast2go	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	GO:0016682	Molecular Function	77%
Blast2go	cell wall	GO:0005618	Cellular Component	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	77%
Blast2go	response to karrikin	GO:0080167	Biological Process	77%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Uncharacterised domain XH	IPR005379	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRY9

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 148 - 583

Fln protein: RSFTADGAIYLNSTGDNPSIHPQWQPESFGHAIIVNGKVWPYMKVKRTKYRFRIVNANNARFCNFALSNGLSMTFVGSDSAYLPAPVTVKQFLLSPSEIADIVVDFNDSATEEAILTNDAPYPYPSGSPVDELNSKVMKFLIETTMMG

Protein Length: 149

Fln nts: CCGGAGCTTTACGGCAGACGGGGCTATTTATTTGAACTCCACAGGCGACAATCCATCCATCCATCCCCAGTGGCAGCCAGAGTCTTTTGGACATGCAATCATAGTGAACGGCAAGGTATGGCCTTACATGAAGGTAAAGAGAACAAAATACAGATTCAGAATCGTGAATGCCAACAACGCTCGCTTCTGCAATTTCGCCTTGAGCAACGGCCTGAGCATGACTTTTGTAGGCTCCGATTCGGCATACTTACCAGCGCCCGTAACCGTGAAACAATTCCTGCTTTCTCCTTCCGAGATCGCAGACATCGTTGTAGATTTCAACGATTCGGCAACAGAGGAGGCGATATTAACAAACGACGCACCCTATCCATACCCCTCAGGAAGTCCCGTGGACGAGCTGAACAGCAAGGTCATGAAATTCCTCATCGAAACAACCATGATGGGC

Fln Alignment:

AllPineV4_c58503___RSFTADGAIYLNSTGDNPSIHPQWQPESFGHAIIVNGKVWPYMKVKRTKYRFRIVNANNARFCNFALSNGLSMTFVGSDSAYLPAPVTVKQFLLSPSEIADIVVDFNDSATEEAILTNDAPYPYPSGSPVDELNSKVMKFLIET
B8LRY9_______________RSFATDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPYLKVKRRKYRFRILNASNARFYRFALSNGLNMTHIGSDSTYIPMPVTAKQFLLGPSELADIVIDFTDSPTGEAILTNDAVYPYPSGDPVDHLNSKVMKFVIES

SSRs (tot: 1)

Start position	End position	Sequence	Length
51	66	ATCC ATCC ATCC ATCC	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain