SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57976

Length: 508 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene57976
TCGGTTGGTCTCGCCGTTCGAAGGGCCGCCTACGGTGTCCTCCGATTCGTAATGGAGTCGGGCGCAAAGGGATGCGAGGTCGTCATCTCTGGAAAGCTCCGCGCTGCCCGTGCAAAGGCAATGAAGTTCACCGACGGTTTCATGATCCACTCCGGTCAGCCAGCACGCGATTTCATCGACCAGGCAGTACGACACGTCTACCTCCGTCAAGGTGTACTCGGTATCAAGGTCAAGATCATGCTTGCCTTCGACCCCGAAGGCCGTGTTGGTCCCTCCAAGCCCCTCCCAGACTCTGTTACCATCGTCGAGCCAAAGGAGGAGCAGGCCATCTCTGCACCCATCAGCGACTCCAAGGTCCAGGAGGTCCAGACTGCCCCTGCTGCTCAGGTCGAGGCTACTCGAGAGGTTGCCGACGTCGCTCAGCCATACTAGGCGTTTCCTTCCGTGTCTGCTATCTTTACTTGAAGAATACGGTAGCTTTTCGCGTATCATCAGGCTGTAGCTTTCG

Ace file of the UniGene sp_v2.0_unigene57976

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytoplasmic ribosomal protein subunit S3 [Neurospora crassa OR74A] gb\|EAA26938.2\| cytoplasmic ribosomal protein subunit S3 [Neurospora crassa OR74A] gb\|EGO58197.1\| cytoplasmic ribosomal protein subunit S3 [Neurospora tetrasperma FGSC 2508]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	40s ribosomal protein s3	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	mycelium development	GO:0043581	Biological Process	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Ribosomal protein S3, eukaryotic/archaeal	IPR005703	-	-
Sma3		IPR008282	-	-
Sma3	K homology domain-like, alpha/beta	IPR015946	-	-
Sma3	Ribosomal protein S3, conserved site	IPR018280	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR91

Fln msg: your sequence is shorter than subject: 144 - 233

Fln protein: SVGLAVRRAAYGVLRFVMESGAKGCEVVISGKLRAARAKAMKFTDGFMIHSGQPARDFIDQAVRHVYLRQGVLGIKVKIMLAFDPEGRVGPSKPLPDSVTIVEPKEEQAISAPISDSKVQEVQTAPAAQVEATREVADVAQPY*

Protein Length: 145

Fln nts: TCGGTTGGTCTCGCCGTTCGAAGGGCCGCCTACGGTGTCCTCCGATTCGTAATGGAGTCGGGCGCAAAGGGATGCGAGGTCGTCATCTCTGGAAAGCTCCGCGCTGCCCGTGCAAAGGCAATGAAGTTCACCGACGGTTTCATGATCCACTCCGGTCAGCCAGCACGCGATTTCATCGACCAGGCAGTACGACACGTCTACCTCCGTCAAGGTGTACTCGGTATCAAGGTCAAGATCATGCTTGCCTTCGACCCCGAAGGCCGTGTTGGTCCCTCCAAGCCCCTCCCAGACTCTGTTACCATCGTCGAGCCAAAGGAGGAGCAGGCCATCTCTGCACCCATCAGCGACTCCAAGGTCCAGGAGGTCCAGACTGCCCCTGCTGCTCAGGTCGAGGCTACTCGAGAGGTTGCCGACGTCGCTCAGCCATACTAG___GCGTTTCCTTCCGTGTCTGCTATCTTTACTTGAAGAATACGGTAGCTTTTCGCGTATCATCAGGCTGTAGCTTTCG

Fln Alignment:

AllPineV4_c58456___GLAVRRAAYGVLRFVMESGAKGCEVVISGKLRAARAKAMKFTDGFMIHSGQPARDFIDQAVRHVYLRQGVLGIKVKIMLAFDPEGRVGPSKPLPDSVTIVEPKEEQAISAPISDSKVQEV
A9NR91_______________GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDRAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPLPDFVTIYTPKDEEDFSSKPSVGNEVEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain