SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57935

Length: 516 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene57935
TCAAATTGGTTACGACAGCCTCGACAGGGAAGCAAAGCAGATGTTCTTAGACAGTGCGTGTTTTTTCATAGGACAGAAAAGGGATACTGCCATAAGAATATGGGAGGGATCCGGCTGGGATGGTCGTTCCGGGTTTGTAACTCTACAGTACAAATGCCTTTTGCAACTGGATAGTGAAAATAATATAGATATGCACGATCACCTTCGGGATTTCGGAAGAGCTGTTGCTGTTGCTGATGCTTCGTTGCCTGCTCGTCTTTTGCATTCTTCTACCCATATTAAGAAGCAGTTATCTGGAAGAGACGTGCGGGGCATTAAGATGGTACTGGGTGAAGATAATGATGATGTTGATGTGAGGAGCTTGGAACTTCTTGATGCTGAAAATGGTATTTTGGAACGCCTTTTGAGAAGGCCGGAGGAGCAAATCCCAAGACGTCTCATATGGCTACGGTGGAACAAGTGTCCCACGCCTTCGCTGCCTTTGTGGCTACCAACGGAGAGTTTAAGGGTTCTACA

Ace file of the UniGene sp_v2.0_unigene57935 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I9_PINTA	-	-	2.0e-28	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	nbs lrr	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW11

Fln msg: Distance to subject end: 315 aas, your sequence is shorter than subject: 158 - 495

Fln protein: MFLDSACFFIGQKRDTAIRIWEGSGWDGRSGFVTLQYKCLLQLDSENNIDMHDHLRDFGRAVAVADASLPARLLHSSTHIKKQLSGRDVRGIKMVLGEDNDDVDVRSLELLDAENGILERLLRRPEEQIPRRLIWLRWNKCPTPSLPLWLPTESLRVL

Protein Length: 159

Fln nts: TCAAATTGGTTACGACAGCCTCGACAGGGAAGCAAAGCAG_-_ATGTTCTTAGACAGTGCGTGTTTTTTCATAGGACAGAAAAGGGATACTGCCATAAGAATATGGGAGGGATCCGGCTGGGATGGTCGTTCCGGGTTTGTAACTCTACAGTACAAATGCCTTTTGCAACTGGATAGTGAAAATAATATAGATATGCACGATCACCTTCGGGATTTCGGAAGAGCTGTTGCTGTTGCTGATGCTTCGTTGCCTGCTCGTCTTTTGCATTCTTCTACCCATATTAAGAAGCAGTTATCTGGAAGAGACGTGCGGGGCATTAAGATGGTACTGGGTGAAGATAATGATGATGTTGATGTGAGGAGCTTGGAACTTCTTGATGCTGAAAATGGTATTTTGGAACGCCTTTTGAGAAGGCCGGAGGAGCAAATCCCAAGACGTCTCATATGGCTACGGTGGAACAAGTGTCCCACGCCTTCGCTGCCTTTGTGGCTACCAACGGAGAGTTTAAGGGTTCTACA

Fln Alignment:

AllPineV4_c58409___EAKQMFLDSACFFIGQKRDTAIRIWEGSGWDGRSGFVTLQYKCLLQLDSENNIDMHDHLRDFGRAVAVADASLPARLLHSST--HIKKQLSGRD---VRGIKMVLGEDNDDV----------------DVRSLELLDA-ENGILERLLRRPEEQIPRRLIWLRWNKCPTPSLPLWLPTESLRVL
A9NW11_______________EQQQMFLDTACFFIGQKRDTAIRIWEGSGWNGRLGLQTLENRCLLEVDIENNIDMHDHLRDFGK--AVADASLPRRLLYSTAIKDMLEQLSNEQVSTVRGIRVVLGDYYDDVYASGGMDTLFDALDGIDRRTLELVDTDENAILACILRKP---VP-SLIWLRWNKCPNLSLPWWIPMGRLRVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain