SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57738

Length: 481 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene57738
AATTTGTAATTTGAGCAAGTTGGAAATCCTTTATCTAGATAACAACTTTCTCAATGGTACAATTCCAAAAGTTATAGGAAAGCTTCAATCCCTCACATCATTAGCTTTCAGTGCAAACAAGTTAAGTGGACATATACCATATAGTATAGGTCAGTTAAAATTTCTCAGTCAATTAGTATTAGAAGAGATATTAGAAGAGAACAATATTTCTGGGAGTATTCCGGAAAGTATTAGCGGTTTGGTTTCACTTCAAGAATTAAATGTACTAAGGAATGCAGTAGAAGGACCAATACCCCATGGTATTCGCAATTGCACTACTTTAAAATGGATAATGTTGGCCTCAAACTTACTTAGTGGAGATCTAAACAATCTGGAATTTCCATCTTCTCTCGAAGTTTTCTCTGCATACTCTAATAACTTCACAGGGACTTTGCCAACGTCTTTGATCAATTGTACGAGGATCCATATGTTGGATTTGCAT

Ace file of the UniGene sp_v2.0_unigene57738

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	brassinosteroid-insensitive 1	-	-	1.07137e-28	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	microtubule bundle formation	GO:0001578	Biological Process	1.07137e-28	57%
Blast2go	skotomorphogenesis	GO:0009647	Biological Process	1.07137e-28	57%
Blast2go	detection of brassinosteroid stimulus	GO:0009729	Biological Process	1.07137e-28	57%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	1.07137e-28	57%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLA8

Fln msg: Distance to subject end: 303 aas, your sequence is shorter than subject: 160 - 914

Fln protein: ICNLSKLEILYLDNNFLNGTIPKVIGKLQSLTSLAFSANKLSGHIPYSIGQLKFLSQLVLEEILEENNISGSIPESISGLVSLQELNVLRNAVEGPIPHGIRNCTTLKWIMLASNLLSGDLNNLEFPSSLEVFSAYSNNFTGTLPTSLINCTRIHMLDLH

Protein Length: 161

Fln nts: AATTTGTAATTTGAGCAAGTTGGAAATCCTTTATCTAGATAACAACTTTCTCAATGGTACAATTCCAAAAGTTATAGGAAAGCTTCAATCCCTCACATCATTAGCTTTCAGTGCAAACAAGTTAAGTGGACATATACCATATAGTATAGGTCAGTTAAAATTTCTCAGTCAATTAGTATTAGAAGAGATATTAGAAGAGAACAATATTTCTGGGAGTATTCCGGAAAGTATTAGCGGTTTGGTTTCACTTCAAGAATTAAATGTACTAAGGAATGCAGTAGAAGGACCAATACCCCATGGTATTCGCAATTGCACTACTTTAAAATGGATAATGTTGGCCTCAAACTTACTTAGTGGAGATCTAAACAATCTGGAATTTCCATCTTCTCTCGAAGTTTTCTCTGCATACTCTAATAACTTCACAGGGACTTTGCCAACGTCTTTGATCAATTGTACGAGGATCCATATGTTGGATTTGCAT

Fln Alignment:

AllPineV4_c58171___ICNLSKLEILYLDNNFLNGTIPKVIGKLQSLTSLAFSANKLSGHIPYSIGQLKFLSQLVXXXXXXXXXXSGSIPESISGLVSLQELNVLRNAVEGPIPHGIRNCTTLKWIMLASNLLSGDLNNLEFPSSLEVFSAYSNNFTGTLPTSLINCTRIHMLDL
B8LLA8_______________IKNLSKLTYLSFTDNYLIGTIPNFIGNLYSLQYLYLDSNNLTGYIPHSIGQLKDLILL----NISNNNIFGSIPDSISGLVSLSSLILSRNNLVGPIPKGIGNCT-----------------------SLTIFSAHSNNLSGTLPVSLAYCTNITLIDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain