SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57718

Length: 553 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene57718
CATGAATCTCTTTTTGGCCTTGCACAGAAATATGGGCCTCTTATGTCTCTGAGACTGGGATGCAAATTAACAGTTGTTGTTTCATCACCATCCATGGCAAAAGAGGTGCTGAAAAACAATGACCAGACCTTTTCCAGCAGGTCTATCAACATGGCTGCCAGGACATTTGCATACCAGGGCACTAGTCTGGTATGGAGTCCTTATGGTCCTCACTGGCGGTTGCTCAGAAGGATCTGTAACGCTGAACTATTCTCACCCAAAAGGCTTGATGCCCTTCAGCATTTGAGAAGTGATGAAGTAAATAGGACCATTAGGTCTATCTTTGAGGACTCCATTGAGGGACAGAGTGTGAATATTGGAGAGATAGCCTTTCTGAATTCACTTAGCCTTGTGGGCAGGATGGTTTGCAGCAGAAATGTATTTCACCCGGGTTCTAAAGAGGTTGCAGAGTTTAAGGATATGGTATGGGAAGTCCTCAAGTTGACAGTCTCTTTGACAGGATTATTGAGGAGCGTCTAGGAGAAGATGATGATAATGATGGGGCAACTGTTCA

Ace file of the UniGene sp_v2.0_unigene57718

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Geraniol 10-hydroxylase n=1 Tax=Catharanthus roseus RepID=Q8VWZ7_CATRO	-	-	3.0e-30	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	cytochrome p450 76c4	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV92

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 269 aas, your sequence is shorter than subject: 173 - 510

Fln protein: HESLFGLAQKYGPLMSLRLGCKLTVVVSSPSMAKEVLKNNDQTFSSRSINMAARTFAYQGTSLVWSPYGPHWRLLRRICNAELFSPKRLDALQHLRSDEVNRTIRSIFEDSIEGQSVNIGEIAFLNSLSLVGRMVCSRNVFHPGSKEVAEFKDMVWEVLKLTVSLTGLLRSV*

Protein Length: 174

Fln nts: CATGAATCTCTTTTTGGCCTTGCACAGAAATATGGGCCTCTTATGTCTCTGAGACTGGGATGCAAATTAACAGTTGTTGTTTCATCACCATCCATGGCAAAAGAGGTGCTGAAAAACAATGACCAGACCTTTTCCAGCAGGTCTATCAACATGGCTGCCAGGACATTTGCATACCAGGGCACTAGTCTGGTATGGAGTCCTTATGGTCCTCACTGGCGGTTGCTCAGAAGGATCTGTAACGCTGAACTATTCTCACCCAAAAGGCTTGATGCCCTTCAGCATTTGAGAAGTGATGAAGTAAATAGGACCATTAGGTCTATCTTTGAGGACTCCATTGAGGGACAGAGTGTGAATATTGGAGAGATAGCCTTTCTGAATTCACTTAGCCTTGTGGGCAGGATGGTTTGCAGCAGAAATGTATTTCACCCGGGTTCTAAAGAGGTTGCAGAGTTTAAGGATATGGTATGGGAAGTCCTCAAGTTGACAGTCTCTTTGACAGGATTATTGAGGAGCGTCTAGGAGAAGATGATGATAATGATGGGGCAACTGTTCA

Fln Alignment:

AllPineV4_c58145___HESLFGLAQKYGPLMSLRLGCKLTVVVSSPSMAKEVLKNNDQTFSSRSINMAARTFAYQGTSLVWSPYGPHWRLLRRICNAELFSPKRLDALQHLRSDEVNRTIRSIFEDSIEGQSVNIGEIAFLNSLSLVGRMVCSRNVFHPGSKEVAEFKDMVWEVLKLT
A9NV92_______________HESLFGLAQKYGPLMSLRLGCKLTMVVSSPSMAKEVLKDNDQTFSSRSINMAARTFAYQGTSLVWSPYGPHWRFLRRICNAELFSPKRLDALQHLRREEVNRTIRSIFEVSMEGQSVNIGEIAFLNSLSLVGMMVCSRNLFNPGSKEVAEFKEMVWEVLKLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain