SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57630

Length: 380 nt

UniGene Fasta

>sp_v2.0_unigene57630
CTTTGAAAGAAGAAGTTGGAGAGAGAGAGAAATGGATCATAAATCTATTCTTCTGCTCATCACCATGTTTGTGTGCTTTCTTCATTACCATACTCATACTCAAGCTCATACGACGGGGGAACCCTCTTCCCCCATGGCCGATCAGTATGCCCATCAAAGGGACGTGGAGGCGCTTCTGAGCTTCAAAGAGGGTGTTATATCCGATCCATATGGATCGCTCTCCAACTGGACGGCCCATAACTCACATAACGTCTGCCGCTGGAACGGAATTTTGTGCACACCAAACACTCAACGAGTTGTTGCAATTTCACTCTCTTCCTGCGACTTGAATGGTACGTTATCCCCGTCTCTTGGCAACCTCTCTCTGTTGCGGACTTTAG

Ace file of the UniGene sp_v2.0_unigene57630

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group]	-	-	2.0e-11	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	kinase-like protein	-	-	3.15591e-22	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 812 aas, atg_distance in limit (1-15): atg_distance = 9, your sequence is shorter than subject: 116 - 946

Fln protein: MDHKSILLLITMFVCFLHYHTHTQAHTTGEPSSPMADQYAHQRDVEALLSFKEGVISDPYGSLSNWTAHNSHNVCRWNGILCTPNTQRVVAISLSSCDLNGTLSPSLGNLSLLRTL

Protein Length: 117

Fln nts: CTTTGAAAGAAGAAGTTGGAGAGAGAGAGAA_-_ATGGATCATAAATCTATTCTTCTGCTCATCACCATGTTTGTGTGCTTTCTTCATTACCATACTCATACTCAAGCTCATACGACGGGGGAACCCTCTTCCCCCATGGCCGATCAGTATGCCCATCAAAGGGACGTGGAGGCGCTTCTGAGCTTCAAAGAGGGTGTTATATCCGATCCATATGGATCGCTCTCCAACTGGACGGCCCATAACTCACATAACGTCTGCCGCTGGAACGGAATTTTGTGCACACCAAACACTCAACGAGTTGTTGCAATTTCACTCTCTTCCTGCGACTTGAATGGTACGTTATCCCCGTCTCTTGGCAACCTCTCTCTGTTGCGGACTTTAG

Fln Alignment:

AllPineV4_c58043___HQRDVEALLSFKEGVISDPYGSLSNWTAHNSHNVCRWNGILCTPNTQRVVAISLSSCDLNGTLSPSLGNLSLLRTL
C0PTA1_______________HERDLNALLAFKKAITYDPSRSLSNWTAQNSHNICSWYGVRCRPHSRRVVQIELSSSGLEGILSSSLGSLSFLKTL

SSRs (tot: 1)

Start position	End position	Sequence	Length
19	30	GA GA GA GA GA GA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain