SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57628

Length: 275 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene57628
CTAGGGGATGTCCGTGTTTTAGCAAATACTTCATTTGCATTGGTGAGAAGAGAAAGGTCTTCTGAAATTCGTCTTTATGGATTCAAAATGCTACAGCATCTAGTGCGGTTGCGATGGGAGGAGCTCAGCACTGAAGAAAGGGAGAATTTGCAAAGATCACAGTTAATATGATTTGTGAAGTAGCAAAGCCTCATGAAGAATGGGTATTGAAGAGCCAGACTGCAGCACTTGTAGCAGAGGTGGTAAGGAGAGCAGGGCTTCCTCTATGGCAGGAA

Ace file of the UniGene sp_v2.0_unigene57628

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HASTY [Arabidopsis thaliana]	-	-	7.0e-20	73%
FL-Next	sp=Protein HASTY 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%
Blast2go	protein hasty 1-like	-	-	1.30576e-27	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	root development	GO:0048364	Biological Process	1.30576e-27	84%
Blast2go	pre-miRNA export from nucleus	GO:0035281	Biological Process	1.30576e-27	84%
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	1.30576e-27	84%
Blast2go	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	1.30576e-27	84%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	1.30576e-27	84%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	1.30576e-27	84%
Blast2go	plastoquinone biosynthetic process	GO:0010236	Biological Process	1.30576e-27	84%
Blast2go	protein binding	GO:0005515	Molecular Function	1.30576e-27	84%
Blast2go	homogentisate solanesyltransferase activity	GO:0010357	Molecular Function	1.30576e-27	84%
Blast2go	homogentisate geranylgeranyltransferase activity	GO:0010356	Molecular Function	1.30576e-27	84%
Blast2go	homogentisate farnesyltransferase activity	GO:0010355	Molecular Function	1.30576e-27	84%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	1.30576e-27	84%
Blast2go	nucleus	GO:0005634	Cellular Component	1.30576e-27	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo-like helical	IPR011989	-	0.0	-
Sma3	Exportin-1/Importin-beta-like	IPR013598	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WP44

Fln msg: Separated hits, possible frame ERROR between 150 and 156, Distance to subject end: 1071 aas, your sequence is shorter than subject: 92 - 1202

Fln protein: LGDVRVLANTSFALVRRERSSEIRLYGFKMLQHLVRLRWEELSTEERENxxxITVNMICEVAKPHEEWVLKSQTAALVAEVVRRAGLPLWQE

Protein Length: 93

Fln nts: CTAGGGGATGTCCGTGTTTTAGCAAATACTTCATTTGCATTGGTGAGAAGAGAAAGGTCTTCTGAAATTCGTCTTTATGGATTCAAAATGCTACAGCATCTAGTGCGGTTGCGATGGGAGGAGCTCAGCACTGAAGAAAGGGAGAATTTxxxxxxGATCACAGTTAATATGATTTGTGAAGTAGCAAAGCCTCATGAAGAATGGGTATTGAAGAGCCAGACTGCAGCACTTGTAGCAGAGGTGGTAAGGAGAGCAGGGCTTCCTCTATGGCAGGAA

Fln Alignment:

AllPineV4_c58041___GDVRVLANTSFALVRRERSSEIRLYGFKMLQHLVRLRWEELSTEERENLxxITVNMICEVAKPHEEWVLKSQTAALVAEVVRRAGLPLWQE
Q0WP44_______________GDVRVLAKTSFHLVKKEWSSEIRLHAFKMLQHLVRLRWDELSPPECRGLxxLSIELMSEVANASENWPLKSQSAALVAEIVRREGPDRWQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain