SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57484

Length: 401 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene57484
GATGATCGATACAGTGATATGAGGTTCAATGGTTCATTGTGCGCAAAGGTACTCTTGCACTGAGGGTAACCAAAATACAAAATAAAATTGTGTTGAGGTGTGTTCAAAATGAGGAAAGGAGTTTTTGTTGCTAACAAGGATAGATTGTCATGCATCGATTCCTTTCGAGACACAAGCAGGGCATTTTGTGATTTGGAACTTATATAATCATACAAAGGAACATATGAAATAGATTTGTTGGTCACTAGGAATTTTGTGATTTGGAACCTATATACTCATAAGAAGGAACATGTGAAATCAATGCATTGGTCATTGGGAGAGAAGTCACTGGAACTACAAGTTTTAAAGCATTGCCTTCTTGTAAACGATTAACTACAAAGTTATAGGTACAATTCATCTAC

Ace file of the UniGene sp_v2.0_unigene57484

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative short-chain acyl-CoA oxidase n=1 Tax=Tropaeolum majus RepID=Q6J513_TROMA	-	-	4.0e-06	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	short-chain acyl- oxidase	-	-	2.91304e-11	77%

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3		IPR013764	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUS2

Fln msg: Separated hits, possible frame ERROR between 110 and 115, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 124 - 429

Fln protein: *SIQ*YEVQWFIVRKGTLALRVTKIQNKIVLRCVQxxxKGVFVANKDRLSCIDSFRDTSRAFCDLELI*SYKGTYEIDLLVTRNFVIWNLYTHKKEHVKSMHWSLGEKSLELQVLKHCLLVND*

Protein Length: 125

Fln nts: GATGATCGATACAGTGATATGAGGTTCAATGGTTCATTGTGCGCAAAGGTACTCTTGCACTGAGGGTAACCAAAATACAAAATAAAATTGTGTTGAGGTGTGTTCAAAAxxxxxxGAAAGGAGTTTTTGTTGCTAACAAGGATAGATTGTCATGCATCGATTCCTTTCGAGACACAAGCAGGGCATTTTGTGATTTGGAACTTATATAATCATACAAAGGAACATATGAAATAGATTTGTTGGTCACTAGGAATTTTGTGATTTGGAACCTATATACTCATAAGAAGGAACATGTGAAATCAATGCATTGGTCATTGGGAGAGAAGTCACTGGAACTACAAGTTTTAAAGCATTGCCTTCTTGTAAACGATTAA___CTACAAAGTTATAGGTACAATTCATCTAC

Fln Alignment:

AllPineV4_c57866___EVQWFIVRKGTLALRVTKIQNKIVLRCVQNxxKGVFVANKDRLSCIDSFRDTSRAFCDLELI*SYK
A9NUS2_______________QINGFIVRKGTPGLRVTKIENKIGLRCVQNxxKGVFVADEDRLPGIDSFQDTSKVLAVSRIMVSWQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain