SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57362

Length: 343 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene57362
AATGTATGCGCGCTGATCTCCCTGGGCTAAAGAAAGATGACATTGATGTTACTGTGGAGAATGGACGCGTCTTGAAGATCAGCGGGCAGTGGAATCAGAATAAACGGCTACATGGTTGTGGAGAGTGGTGGAAGGCGGAATACGTAAGAAGATTTTTGCTACCCGGGAATGGAGATATTGAGCAAGCACATGCTAGTATGATGATGGTATTCTTGAAATCAGAATCCCAAAGACGAGGCAGAAAAGACAACCACCCATACTCCATTTAGTGGAGGTTACAGACTGAGTATACAGGGCACTTGTGAATGCATTGTTTACAGGACTGGAGATTGACTCTATGTAG

Ace file of the UniGene sp_v2.0_unigene57362

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nuclear-enriched phloem companion cell 8 protein [Arabidopsis thaliana] sp\|Q9FIT9.1\|HS217_ARATH RecName: Full=21.7 kDa class VI heat shock protein; AltName: Full=21.7 kDa heat shock protein; Short=AtHsp21.7 dbj\|BAB09345.1\| unnamed protein product [Arabido	-	-	1.0e-07	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	kda class vi heat shock protein	-	-	1.53912e-36	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRE5

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 200 and 200, your sequence is shorter than subject: 95 - 190

Fln protein: CMRADLPGLKKDDIDVTVENGRVLKISGQWNQNKRLHGCGEWWKAEYVRRFLLPGNGDIEQAHASxxDGILEIRIPKTRQKRQPPILHLVEVTD*

Protein Length: 96

Fln nts: AATGTATGCGCGCTGATCTCCCTGGGCTAAAGAAAGATGACATTGATGTTACTGTGGAGAATGGACGCGTCTTGAAGATCAGCGGGCAGTGGAATCAGAATAAACGGCTACATGGTTGTGGAGAGTGGTGGAAGGCGGAATACGTAAGAAGATTTTTGCTACCCGGGAATGGAGATATTGAGCAAGCACATGCTAGTxxxxxxGATGGTATTCTTGAAATCAGAATCCCAAAGACGAGGCAGAAAAGACAACCACCCATACTCCATTTAGTGGAGGTTACAGACTGAGTATACAGGGCACTTGTGAATGCATTGTTTACAGGACTGGAGATTGACTCTATGTAG

Fln Alignment:

AllPineV4_c57713___MRADLPGLKKDDIDVTVENGRVLKISGQWNQNKRLHGCGEWWKAEYVRRFLLPGNGDIEQAHASMDDGILEIRIPKTRQKRQPPILHLVEVTD
B8LRE5_______________MRADLPGLKKDDVDVTVENGRVLKINGQWNQNKRQDDCGEWWKEEYMRRFILPENGDIEQAHASMDDGVLEIRIPKTKKKRPPPILHSVEVTD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain