SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57266

Length: 285 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene57266
AATCTCGGAAGTATGATGCCAAGGCAGACTTATGGAGTGTGGGTACTATTCTATTCCAGCTTGTCACAGGAAATCCACCATTTTCTGGCAATCCTCAGTTTCAGCTAATGCAAAATATTATGAAGTCAAATGAGCTACACTTTCCACATGACATTGTTGGAGATCTCCACCCCGATTGCATTGATTTATGCCAAAAACTATTGCGTCGAGATCCAGTCGAGCGGTTGTCATTTGAGGAGTTCTTCAATCACAGGTTTATGATAGAGCAAAGGCCTGTAGGTGGTT

Ace file of the UniGene sp_v2.0_unigene57266 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	unc51-like kinase [Arabidopsis thaliana] gb\|AAX12876.1\| At2g37840 [Arabidopsis thaliana] gb\|AEC09456.1\| unc51-like kinase [Arabidopsis thaliana]	-	-	3.0e-30	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	unc51-like kinase	-	-	3.0748e-37	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	3.0748e-37	80%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Domain of unknown function DUF1977, DnaJ-like	IPR015399	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2E8

Fln msg: Distance to subject end: 70 aas, your sequence is shorter than subject: 94 - 192

Fln protein: SRKYDAKADLWSVGTILFQLVTGNPPFSGNPQFQLMQNIMKSNELHFPHDIVGDLHPDCIDLCQKLLRRDPVERLSFEEFFNHRFMIEQRPVGG

Protein Length: 95

Fln nts: AATCTCGGAAGTATGATGCCAAGGCAGACTTATGGAGTGTGGGTACTATTCTATTCCAGCTTGTCACAGGAAATCCACCATTTTCTGGCAATCCTCAGTTTCAGCTAATGCAAAATATTATGAAGTCAAATGAGCTACACTTTCCACATGACATTGTTGGAGATCTCCACCCCGATTGCATTGATTTATGCCAAAAACTATTGCGTCGAGATCCAGTCGAGCGGTTGTCATTTGAGGAGTTCTTCAATCACAGGTTTATGATAGAGCAAAGGCCTGTAGGTGGTT

Fln Alignment:

AllPineV4_c57594___SRKYDAKADLWSVGTILFQLVTGNPPFSGNPQFQLMQNIMKSNELHFPHDIVGDLHPDCIDLCQKLLRRDPVERL
A9P2E8_______________SKGHNKSADWWSVGILLYEMLTGQPPYTNNNRHKLQEKIIK-EKIKLPSYLTSEVH----SLLKGLLQKDPSKRI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain