SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57254

Length: 366 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene57254
GTTATGTCAGACACTTCCAGATGTTGAGGAGTGGGGCCAGATTATCTTGATTGAGATTTTATTACGTTATGCTGTTGCAAAACATGGAATTTCAAAAATGTCTGCCGCATTCAATTCAGGTTATTCAAAGAGACTAAACATTGAAACAGAAAATTCTGATAGTTCATCAGAGGGTTTTATGAACCACGGATATGGCAGAAGCAGTGCCTCTAAGGTAGAGGAAGGTCAAAAAATGGAAGGAAAGGGCCTGGTTTCAAGCTACTTGAGAAATGATCAACGTAAGTTATCAAGGACGACTTCCTTGAGCAGTGATTCATCGGAGTCAGATGATGCTATTCCTACTATTGAGCTACATAGTGATTTGAA

Ace file of the UniGene sp_v2.0_unigene57254 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative adaptor-related protein complex AP-3, beta 2 subunit [Oryza sativa Japonica Group] dbj\|BAD87418.1\| putative adaptor-related protein complex AP-3, beta 2 subunit [Oryza sativa Japonica Group] gb\|EAZ15002.1\| hypothetical protein OsJ_04940 [Oryza sa	-	-	4.0e-08	48%
FL-Next	sp=AP3-complex subunit beta-A; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%
Blast2go	ap3-complex subunit beta-a-like	-	-	1.9402e-10	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	1.9402e-10	67%
Blast2go	cellular component organization	GO:0016043	Biological Process	1.9402e-10	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M2T1

Fln msg: Distance to subject end: 785 aas, your sequence is shorter than subject: 121 - 987

Fln protein: LCQTLPDVEEWGQIILIEILLRYAVAKHGISKMSAAFNSGYSKRLNIETENSDSSSEGFMNHGYGRSSASKVEEGQKMEGKGLVSSYLRNDQRKLSRTTSLSSDSSESDDAIPTIELHSDL

Protein Length: 122

Fln nts: GTTATGTCAGACACTTCCAGATGTTGAGGAGTGGGGCCAGATTATCTTGATTGAGATTTTATTACGTTATGCTGTTGCAAAACATGGAATTTCAAAAATGTCTGCCGCATTCAATTCAGGTTATTCAAAGAGACTAAACATTGAAACAGAAAATTCTGATAGTTCATCAGAGGGTTTTATGAACCACGGATATGGCAGAAGCAGTGCCTCTAAGGTAGAGGAAGGTCAAAAAATGGAAGGAAAGGGCCTGGTTTCAAGCTACTTGAGAAATGATCAACGTAAGTTATCAAGGACGACTTCCTTGAGCAGTGATTCATCGGAGTCAGATGATGCTATTCCTACTATTGAGCTACATAGTGATTTGAA

Fln Alignment:

AllPineV4_c57581___LCQTLPDVEEWGQIILIEILLRYAVAKHGISKMSAAFNSGYSKRLNIETENSDSSSEGFMNHGYGRSSASKVEEGQKME
Q9M2T1_______________LCQILPDVEEWGQILLIGTLLRYVVARHGLVRESL--------MLSIHGTNSNGFCE---KDGLGRDLTLDKEDGGKSD

SNPs (tot: 3)

Position	A %	C %	T %	Probability
247	33	66		0.997464
248	33	66		0.997464
251	66		33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain