SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57250

Length: 531 nt

UniGene Fasta

>sp_v2.0_unigene57250
CGTCGTGACCTTGCTGTCACTCAACATTGGAGGGTCGGGGGGAAGGCAAGATTCGAGAAATGACTGGATCTGTTGTCTTTCCAGTTAAATTTAAGTGCATAGTCTTCAAGCCTTTCAAAAATGAAATCCTAGAAGGTGGAATTGAAGTTGTAATGAAGACAGGTGTTCATGTAACATGTGGACCAATGGCTGAGGTTTTTATACCATCTCAAAAAATGACAGATTTTGAATTTATACCGGGAGAGAATCCTATTTTTAGAAATAAGCAAAGTTCAAATGTGGAGAAAGGTGGAAAGATAAGATTTAAGATACTTGCTATCAAATGGCTTGAACAGCGCCGAGTATTCCAGGCGCTGGGAAGTTTGGAAGGAGATTTTCTAGGACCTATTTTTGATCCTGAGATCTGTAACGAGATGGATTCTGAGAGCCCTAAGATGAATGCTGGGGGCGATGATGAAAATCCTACGGCTAATCCTGAGAACAACAATGAGAATCCATCAAAGAATGCTGATATCAATCCTGAGCATCTTC

Ace file of the UniGene sp_v2.0_unigene57250

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA polymerase II fifth largest subunit like protein [Arabidopsis thaliana] emb\|CAB78508.1\| RNA polymerase II fifth largest subunit like protein [Arabidopsis thaliana]	-	-	2.0e-30	50%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	37%
Blast2go	dna-directed rna polymerase ii subunit g	-	-	1.97359e-41	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	1.97359e-41	68%
Blast2go		GO:0080137	Cellular Component	1.97359e-41	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA polymerase Rpb7, N-terminal	IPR005576	-	0.0	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P46279

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 41 aas,

Fln protein: S*PCCHSTLEGRGEGKIREMTGSVVFPVKFKCIVFKPFKNEILEGGIEVVMKTGVHVTCGPMAEVFIPSQKMTDFEFIPGENPIFRNKQSSNVEKGGKIRFKILAIKWLEQRRVFQALGSLEGDFLGPIFDPEICNEMDSESPKMNAGGDDENPTANPENNNENPSKNADINPEHL

Protein Length: 177

Fln nts: CGTCGTGACCTTGCTGTCACTCAACATTGGAGGGTCGGGGGGAAGGCAAGATTCGAGAAATGACTGGATCTGTTGTCTTTCCAGTTAAATTTAAGTGCATAGTCTTCAAGCCTTTCAAAAATGAAATCCTAGAAGGTGGAATTGAAGTTGTAATGAAGACAGGTGTTCATGTAACATGTGGACCAATGGCTGAGGTTTTTATACCATCTCAAAAAATGACAGATTTTGAATTTATACCGGGAGAGAATCCTATTTTTAGAAATAAGCAAAGTTCAAATGTGGAGAAAGGTGGAAAGATAAGATTTAAGATACTTGCTATCAAATGGCTTGAACAGCGCCGAGTATTCCAGGCGCTGGGAAGTTTGGAAGGAGATTTTCTAGGACCTATTTTTGATCCTGAGATCTGTAACGAGATGGATTCTGAGAGCCCTAAGATGAATGCTGGGGGCGATGATGAAAATCCTACGGCTAATCCTGAGAACAACAATGAGAATCCATCAAAGAATGCTGATATCAATCCTGAGCATCTTC

Fln Alignment:

AllPineV4_c57575___LEGRGEGKIREMTGSVVFPVKFKCIVFKPFKNEILEGGIEVVMKTGVHVTCGPMAEVFIPSQKM-TDFEFIPGENPIFRNKQSS-NVEKGGKIRFKILAIKWLEQRRVFQALGSLEGDFLGPIFDP
P46279_______________IENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPV-QIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain