SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57245

Length: 275 nt

UniGene Fasta

>sp_v2.0_unigene57245
CGTCGTGACCTTGGCTGTCACTCAGCTTTGTGAAAGAGGCAGAGAGTGTCATCAATACAATGCCTGTTAAACCTGTTGCTTCTGTGTGGGGGCCTTGCTTAGTGCTTGCAGAATTCATGGTAATTTGGAGATAGGAACACGAGCAGCTGAACGGCTATTCAAATTGGAACCCAATAACTCTGGAAATTATGTGCTGCTGTCAAACATCTATGCTGCCGCAGGCAGATGGCAAGATGTGTCAAAGGTGAGAAGAATGATGGATGATAAGTGGGGTT

Ace file of the UniGene sp_v2.0_unigene57245

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 79 (Fragment) n=2 Tax=Funariaceae RepID=F5CAE5_FUNHY	-	-	2.0e-18	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	pentatricopeptide repeat-containing protein at1g08070-like	-	-	7.10179e-21	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 138 aas, your sequence is shorter than subject: 91 - 246

Fln protein: VVTLAVTQLCERGRECHQYNAC*TCCFCVGALLSACRIHGNLEIGTRAAERLFKLEPNNSGNYVLLSNIYAAAGRWQDVSKVRRMMDDKWG

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTGTGAAAGAGGCAGAGAGTGTCATCAATACAATGCCTGTTAAACCTGTTGCTTCTGTGTGGGGGCCTTGCTTAGTGCTTGCAGAATTCATGGTAATTTGGAGATAGGAACACGAGCAGCTGAACGGCTATTCAAATTGGAACCCAATAACTCTGGAAATTATGTGCTGCTGTCAAACATCTATGCTGCCGCAGGCAGATGGCAAGATGTGTCAAAGGTGAGAAGAATGATGGATGATAAGTGGGGTT

Fln Alignment:

AllPineV4_c57570___GALLSACRIHGNLEIGTRAAERLFKLEPNNSGNYVLLSNIYAAAGRWQDVSKVRRMMDDK
D5AAE0_______________GALLGACRMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain