SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57238

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene57238
GGAAACGAGCAAAGTGAAATGTGTTGCTTGTGGAAAGATGGGTCATTATGTTGTTCAGTGTCCCAACAAGAACGGTAAGAAGAAACAAATAATTGCAACTTCAGCATGTGGATGATTTTGCGGCTATGTTTGATTCAAAGTGTGCTTTGGAGGTGAGTTTACCCACTCATGTCACATCTACCCGTGCTTGGTTCATAGACAATGGAGCATCCAGCCATATGACCAGAGTTAAAGAGCACTTCACGAGCCTTCTAGAGGATGACATTAATTTGGAGGTTGTGCTTGGCGACAACTCCAAAGTCAAGGCGACATGTATGGGGACTGTTTCATTTCATAGGGAGTCATCACCTCCTCTGAAGGTGACAAATGTTCTTTATCTTCCAGGGTTGAAGAAGAGTTTAATATCAATCTGTAGCTTGGAGGACAGGGGGTATACATT

Ace file of the UniGene sp_v2.0_unigene57238 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH	-	-	4.0e-11	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	pol polyprotein	-	-	4.1233e-12	56%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWA6

Fln msg: Distance to subject end: 34 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 104 - 173

Fln protein: MFDSKCALEVSLPTHVTSTRAWFIDNGASSHMTRVKEHFTSLLEDDINLEVVLGDNSKVKATCMGTVSFHRESSPPLKVTNVLYLPGLKKSLISICSLEDRGYT

Protein Length: 105

Fln nts: GGAAACGAGCAAAGTGAAATGTGTTGCTTGTGGAAAGATGGGTCATTATGTTGTTCAGTGTCCCAACAAGAACGGTAAGAAGAAACAAATAATTGCAACTTCAGCATGTGGATGATTTTGCGGCT_-_ATGTTTGATTCAAAGTGTGCTTTGGAGGTGAGTTTACCCACTCATGTCACATCTACCCGTGCTTGGTTCATAGACAATGGAGCATCCAGCCATATGACCAGAGTTAAAGAGCACTTCACGAGCCTTCTAGAGGATGACATTAATTTGGAGGTTGTGCTTGGCGACAACTCCAAAGTCAAGGCGACATGTATGGGGACTGTTTCATTTCATAGGGAGTCATCACCTCCTCTGAAGGTGACAAATGTTCTTTATCTTCCAGGGTTGAAGAAGAGTTTAATATCAATCTGTAGCTTGGAGGACAGGGGGTATACATT

Fln Alignment:

AllPineV4_c57562___MFDSKCALEVSLPTHVTSTRAWFIDNGASSHMTRVKEHFTSLLEDDINLEVVLGDNSKVKATCMGTVSFHRESSPPLKVTNVLYLPGLKKSLISICSLEDRG
A9NWA6_______________MCETISLLHYSTLTGTIEDDMWIIDNGASRHMMGDQARLSDLNERKTSYKVELGDKSTYPVEGFGQASIKLESGNHVHLSNVLYVPGLEKNLVSISCLEDKG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain