SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57157

Length: 354 nt

UniGene Fasta

>sp_v2.0_unigene57157
AATGTGAAAATAAGCTTTTTCCCATTTGTGTGTCAACACTAAAAGAATATAACATACAGGAAGTTGCTTGTGGGCACACTCTTACAGCTGCTCTGGCATCCGGTCAAGTGTTTACAATGGGAAGCAGTTCTTATGGACAGCTTGGTACCCTTCACCCGAAAGATATGCTACCTAATTTAGTAGAGGGAAAGTTGGTAGAAGAAACAGTTGAGGATGTTGCTTGTGGAGCATATCATGTAGCAGTTTTGACAGCTAAGAAAGAAGTGTATACATGGGGGAAGGGGGCCAGTGGAAGACTTGGGCCATGGAAATATGGGAGATTGCAGGACCCCAACACTTGTTGAGGCTTTAAAG

Ace file of the UniGene sp_v2.0_unigene57157

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins	-	-	0.0001	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	protein	-	-	9.54199e-38	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.54199e-38	72%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNM4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 68 aas, your sequence is shorter than subject: 114 - 286

Fln protein: CENKLFPICVSTLKEYNIQEVACGHTLTAALASGQVFTMGSSSYGQLGTLHPKDMLPNLVEGKLVEETVEDVACGAYHVAVLTAKKEVYTWGKGASGRLGPWKYGRLQDPNTC*

Protein Length: 115

Fln nts: AATGTGAAAATAAGCTTTTTCCCATTTGTGTGTCAACACTAAAAGAATATAACATACAGGAAGTTGCTTGTGGGCACACTCTTACAGCTGCTCTGGCATCCGGTCAAGTGTTTACAATGGGAAGCAGTTCTTATGGACAGCTTGGTACCCTTCACCCGAAAGATATGCTACCTAATTTAGTAGAGGGAAAGTTGGTAGAAGAAACAGTTGAGGATGTTGCTTGTGGAGCATATCATGTAGCAGTTTTGACAGCTAAGAAAGAAGTGTATACATGGGGGAAGGGGGCCAGTGGAAGACTTGGGCCATGGAAATATGGGAGATTGCAGGACCCCAACACTTGTTGAGGCTTTAAAG

Fln Alignment:

AllPineV4_c57466___PICVSTLKEYNIQEVACGHTLTAALA-SGQVFTMGSSSYGQLGTLHPKD-MLPNLVEGKLVEETVEDVACGAYHVAVLTAKKEVYTWGKGASGRLGPWKYGRLQDPN
B8LNM4_______________PHAIKTLQGLQIKQIACGDSHCLAVTINGEVQSWGRNQNGQLGVGDNIDHSFPQRVKLPAEEEVVQ-VSCGWRHTVAITGKSNVFSWGRGTSGQLG---HGDILDRN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain