SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57137

Length: 266 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene57137
TCTTCACATACGCTGAGCTTCGGACAGGTCCCTCAGGTAAATAGGATTTCAGAAACCTATTCCTCATGCAACACTGGGTGTTCCTGGATATGTACAGTTCACATCTCCTATTCGCCGTTATGTTGATCTTCTTGCACACTACCAGGTGAAGGCTGTTTTAAGGGGGGAACCCCCTCCCTTCTCATGTAACAAGTTGGAGGGAATGATGCCACTTATTAAAATGCAATTACAAATTGCGAAAAGGTTATATAACAACAGTCTACATT

Ace file of the UniGene sp_v2.0_unigene57137 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribonuclease II-like protein [Arabidopsis thaliana]	-	-	7.0e-16	53%
FL-Next	tr=Putative uncharacterized protein Sb03g039500; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	68%
Blast2go	ribonuclease ii	-	-	4.63378e-27	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	rRNA processing	GO:0006364	Biological Process	4.63378e-27	76%
Blast2go	chloroplast organization	GO:0009658	Biological Process	4.63378e-27	76%
Blast2go	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	4.63378e-27	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	4.63378e-27	76%
Blast2go	chloroplast	GO:0009507	Cellular Component	4.63378e-27	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease II/R	IPR001900	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5XPP8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 80 aas, your sequence is shorter than subject: 88 - 782

Fln protein: LHIR*ASDRSLR*IGFQKPIPHATLGVPGYVQFTSPIRRYVDLLAHYQVKAVLRGEPPPFSCNKLEGMMPLIKMQLQIAKRLYNNSLH

Protein Length: 89

Fln nts: TCTTCACATACGCTGAGCTTCGGACAGGTCCCTCAGGTAAATAGGATTTCAGAAACCTATTCCTCATGCAACACTGGGTGTTCCTGGATATGTACAGTTCACATCTCCTATTCGCCGTTATGTTGATCTTCTTGCACACTACCAGGTGAAGGCTGTTTTAAGGGGGGAACCCCCTCCCTTCTCATGTAACAAGTTGGAGGGAATGATGCCACTTATTAAAATGCAATTACAAATTGCGAAAAGGTTATATAACAACAGTCTACATT

Fln Alignment:

AllPineV4_c57444___FQKPIPHATLGVPGYVQFTSPIRRYVDLLAHYQVKAVLRGEPPPFSCNKLEGMMPLIKMQLQIAKRLYNNSL
C5XPP8_______________FQKPVPHGVLGIPGYVQFTSPIRRYVDLLAHYQVKAFLRGDSPPYSAGDLEGMTFIASMHVKVARRLHSNSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain