SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57092

Length: 167 nt

UniGene Fasta

>sp_v2.0_unigene57092
TACTTGAAGGGCCAGGACTGTTGGTATTAGACGAGGGGCATTTCCCCTGAAATAAGGACACCAACATACTCCATGCTCTTTCTCAAATACATACAAGAAGACGGGTGTTATTGTCAGGCACCCTCTTTCAGAACAATTTTAAGGAACTCTTCAATCTTTTGAGGCTG

Ace file of the UniGene sp_v2.0_unigene57092

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Defective in RNA-directed DNA methylation 1 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L1V4_ARALL	-	-	7.0e-12	58%
FL-Next	sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%
Blast2go	defective in rna-directed dna methylation 1	-	-	1.13327e-14	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	production of siRNA involved in RNA interference	GO:0030422	Biological Process	1.13327e-14	80%
Blast2go	DNA methylation	GO:0006306	Biological Process	1.13327e-14	80%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S775

Fln msg: Distance to subject end: 917 aas, your sequence is shorter than subject: 55 - 1384

Fln protein: LEGPGLLVLDEGHFP*NKDTNILHALSQIHTRRRVLLSGTLFQNNFKELFNLLRL

Protein Length: 56

Fln nts: TACTTGAAGGGCCAGGACTGTTGGTATTAGACGAGGGGCATTTCCCCTGAAATAAGGACACCAACATACTCCATGCTCTTTCTCAAATACATACAAGAAGACGGGTGTTATTGTCAGGCACCCTCTTTCAGAACAATTTTAAGGAACTCTTCAATCTTTTGAGGCTG

Fln Alignment:

AllPineV4_c57391___LVLDEGHFP*NKDTNILHALSQIHTRRRVLLSGTLFQNNFKELFNLL
Q9S775_______________MIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain