SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene57046

Length: 256 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene57046
AAGGTTCGAGGGAATTGATCCCAGTGATCGCTATGCCAACCACAATACAGTCTTCTTTGATGTCAATATGAGGGCTCTTGATGGTTTGCAGGGCCCTGTGTATGTTGGAACAGGATGTGTGTTCCGACGGATTGCTCTGTATGGGTTTGATCCTCCCAGAGCAAAGAAGAACAGGGGTTGCTGTGGCAGAGCTACAAGGGTCAAGCCCAGGAATGGAGATGCAATGGGTCTGCGGATGGGTGATGACGAGGATGAA

Ace file of the UniGene sp_v2.0_unigene57046

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase, CAZy family GT2 n=5 Tax=rosids RepID=B9N113_POPTR	-	-	5.0e-29	68%
FL-Next	tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	61%
Blast2go	cellulose synthase-like protein	-	-	1.04838e-35	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	1.04838e-35	76%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	1.04838e-35	76%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.04838e-35	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.04838e-35	76%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4VWW7

Fln msg: Distance to subject end: 394 aas, your sequence is shorter than subject: 85 - 1096

Fln protein: RFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCVFRRIALYGFDPPRAKKNRGCCGRATRVKPRNGDAMGLRMGDDEDE

Protein Length: 86

Fln nts: AAGGTTCGAGGGAATTGATCCCAGTGATCGCTATGCCAACCACAATACAGTCTTCTTTGATGTCAATATGAGGGCTCTTGATGGTTTGCAGGGCCCTGTGTATGTTGGAACAGGATGTGTGTTCCGACGGATTGCTCTGTATGGGTTTGATCCTCCCAGAGCAAAGAAGAACAGGGGTTGCTGTGGCAGAGCTACAAGGGTCAAGCCCAGGAATGGAGATGCAATGGGTCTGCGGATGGGTGATGACGAGGATGAA

Fln Alignment:

AllPineV4_c57338___RFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCVFRRIALYGFDPPRAKKNR--GCCGRATRVKPRN
Q4VWW7_______________RFDGIDRNDRYANHNTVFFDINLKGLDGIQGPVYVGTGCVFNRQALYGYEPPHKGKIHFSSCCGPRKKSRKSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain