SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56960

Length: 368 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene56960
GGTCTACATTGCACCAGAGTATGGATCAGATGAGGCAGTGTCTACCAAAGGGGATATTTATAGCTATGGAATTTTGTTATTAGAAATGCTTACGAGGAAGCGACCAACCAGTGACATGTTTTCTGGAGAGCTAAACTTTCACAAGTGGGTGAACCTAGCATTTCCACACAAAGTGAAGGAAGTAATTGACCACAAGCTTTTAAACAAGGTGGACGGAGATGAATTTGAAAAAACTGTATATACAAATGCCTACTTTCTTTGCTACAAGTTGGTTTGCATTGTTCAAAAGATTCACCTAATGAACGACCGACTATGAGAGATGTGGTCATGGTATTGGAGACCCTCAGAAATGATTTGAGGGAAAATGA

Ace file of the UniGene sp_v2.0_unigene56960

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative leucine rich repeat containing protein kinase [Oryza sativa Japonica Group] gb\|AAM18148.1\|AC092172_8 Putative leucine rich repeat containing protein kinase [Oryza sativa Japonica Group] gb\|AAP52742.1\| Leucine Rich Repeat family protein, expressed	-	-	1.0e-20	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at3g47570-like	-	-	3.77086e-23	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW30

Fln msg: Separated hits, possible frame ERROR between 220 and 247, Distance to subject end: 32 aas, your sequence is shorter than subject: 122 - 247

Fln protein: VYIAPEYGSDEAVSTKGDIYSYGILLLEMLTRKRPTSDMFSGELNFHKWVNLAFPHKVKEVIDHKLLNKVDGxxxxxxxxxxCLLSLLQVGLHCSKDSPNERPTMRDVVMVLETLRNDLREN

Protein Length: 123

Fln nts: GGTCTACATTGCACCAGAGTATGGATCAGATGAGGCAGTGTCTACCAAAGGGGATATTTATAGCTATGGAATTTTGTTATTAGAAATGCTTACGAGGAAGCGACCAACCAGTGACATGTTTTCTGGAGAGCTAAACTTTCACAAGTGGGTGAACCTAGCATTTCCACACAAAGTGAAGGAAGTAATTGACCACAAGCTTTTAAACAAGGTGGACGGAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxATGCCTACTTTCTTTGCTACAAGTTGGTTTGCATTGTTCAAAAGATTCACCTAATGAACGACCGACTATGAGAGATGTGGTCATGGTATTGGAGACCCTCAGAAATGATTTGAGGGAAAATGA

Fln Alignment:

AllPineV4_c57234___EYGSDEAVSTKGDIYSYGILLLEMLTRKRPTSDMFSGELNFHKWVNLAFPHKVKEVIDHKLL------NKVDGDxxxxxxxxxCLLSLLQVGLHCSKDSPNERPTMRDVVMVLETLRN
A9NW30_______________EYGLDGHVTTKGDVYSYGIVLLEMLTGKKPTDNMFVEGMDLQKWVGNSFPNQLGEIVDNSLLRRTTTSNQVDKDxxxxxxxxxCLSQSITMGLLCTKDAPKERPTMMDIVGTLQSIRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain