SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56943

Length: 279 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene56943
AATTCCTTAGGGGGCAGTGAGCTTGAAAATGTTACTTGGCCAGGAGGATCCACAGACCCACCCCGCGGCTGGGCAACGCCTACCAAAAACAAGCCGTTGAGAATCGCGGTTCCAATTAAAGACGGATTCCCCGGGTTTGTCGTCACGGAGAGAAATGCATCCGGCGTGCTAGTAGTCCCTGAGGATAATCCGGGTTTTGTAATTGAAATATTTAGAGCCGTTCTCAAAAACCTTTCATATGATGTTCCACATGAATTCATTCCTTACAATCACGGGCCA

Ace file of the UniGene sp_v2.0_unigene56943

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative glutamate receptor like-protein [Arabidopsis thaliana] gb\|AAK13249.1\|AF159499_1 putative glutamate receptor like-protein [Arabidopsis thaliana]	-	-	3.0e-12	39%
FL-Next	sp=Glutamate receptor 3.2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	1.64577e-17	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metal ion homeostasis	GO:0006875	Biological Process	1.64577e-17	57%
Blast2go	cellular monovalent inorganic cation homeostasis	GO:0030004	Biological Process	1.64577e-17	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93YT1

Fln msg: Distance to subject end: 391 aas, your sequence is shorter than subject: 93 - 912

Fln protein: NSLGGSELENVTWPGGSTDPPRGWATPTKNKPLRIAVPIKDGFPGFVVTERNASGVLVVPEDNPGFVIEIFRAVLKNLSYDVPHEFIPYNHGP

Protein Length: 94

Fln nts: AATTCCTTAGGGGGCAGTGAGCTTGAAAATGTTACTTGGCCAGGAGGATCCACAGACCCACCCCGCGGCTGGGCAACGCCTACCAAAAACAAGCCGTTGAGAATCGCGGTTCCAATTAAAGACGGATTCCCCGGGTTTGTCGTCACGGAGAGAAATGCATCCGGCGTGCTAGTAGTCCCTGAGGATAATCCGGGTTTTGTAATTGAAATATTTAGAGCCGTTCTCAAAAACCTTTCATATGATGTTCCACATGAATTCATTCCTTACAATCACGGGCCA

Fln Alignment:

AllPineV4_c57213___SLGGSELENVTWPGGSTDPPRGWATPTKNKPLRIAVPIKDGFPGFVVTERNASGVLVVPEDNPGFVIEIFRAVLKNLSYDVPHEFIPYNHG
Q93YT1_______________SSSNQHLNNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFKEFVSRLDGSNKV-------QGYAIDVFEAAVKLISYPVPHEFVLFGDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain