SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56919

Length: 446 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene56919
GCTACTGCAAAAGAACACTATGGTTGAAGGTCTTCCTGTCTTGAAAAATGATCATGTTGAATGTGAGGCATGTGTACTTGGCAAGCAACATAGGGAGGAATTTCCTATACATAAAGAAAAAAGGACAAAGGGAAATACTTGAATTAATTCATACTGATGTATGTGGACCTATGCAAACTAGATCTATTGGTGGAGCATGGTATTTTCTTATTTTTGTGGATGATAGATCTAGATACACATGGGTTTATTTCATAAGAAAGAAGAGTGATGTTTTTGAGTATTTTAAAGAATTTAAGAATATGGTAGAAAAACAAACTGGTAAATATATCAAAATCTTGAGATCTGATCAAGGGGGAGAATTCAAATCAAGAGAATTTAATCAATATTGTAAAAGCAATGGGATTCAGCAACAATTTACAGTACCACATACACCTCAGCAAAATGGA

Ace file of the UniGene sp_v2.0_unigene56919 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH	-	-	2.0e-39	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	copia-type polyprotein	-	-	4.42849e-39	77%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR010256	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 171 aas, your sequence is shorter than subject: 148 - 407

Fln protein: YCKRTLWLKVFLS*KMIMLNVRHVYLASNIGRNFLYIKKKGQREILELIHTDVCGPMQTRSIGGAWYFLIFVDDRSRYTWVYFIRKKSDVFEYFKEFKNMVEKQTGKYIKILRSDQGGEFKSREFNQYCKSNGIQQQFTVPHTPQQNG

Protein Length: 149

Fln nts: GCTACTGCAAAAGAACACTATGGTTGAAGGTCTTCCTGTCTTGAAAAATGATCATGTTGAATGTGAGGCATGTGTACTTGGCAAGCAACATAGGGAGGAATTTCCTATACATAAAGAAAAAAGGACAAAGGGAAATACTTGAATTAATTCATACTGATGTATGTGGACCTATGCAAACTAGATCTATTGGTGGAGCATGGTATTTTCTTATTTTTGTGGATGATAGATCTAGATACACATGGGTTTATTTCATAAGAAAGAAGAGTGATGTTTTTGAGTATTTTAAAGAATTTAAGAATATGGTAGAAAAACAAACTGGTAAATATATCAAAATCTTGAGATCTGATCAAGGGGGAGAATTCAAATCAAGAGAATTTAATCAATATTGTAAAAGCAATGGGATTCAGCAACAATTTACAGTACCACATACACCTCAGCAAAATGGA

Fln Alignment:

AllPineV4_c57185___YIKKKGQREI--LELIHTDVCGPMQTRSIGGAWYFLIFVDDRSRYTWVYFIRKKSDVFEYFKEFKNMVEKQTGKYIKILRSDQGGEFKSREFNQYCKSNGIQQQFTVPHTPQQNG
B8LKX7_______________FIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain