SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56798

Length: 259 nt

UniGene Fasta

>sp_v2.0_unigene56798
GATTATGAGTATCTTCTTTCCATGGCTATAGGAACATTGACACTGGAAAAGGTCCAGCAATTATGTGCTGAGAGAGACAAGGTTGAGGATGATGTTGAGGAGCTCAAAAAGGCAACTCCTAAATCTCTATGGTGCAAAGATCTTGATGCCTTCATATGGGAGCTGGAAGGTCAAGAACTGCAGGAGGCCAAGGATGACGAGTATGAATTGAGCAACATGGGAAGTGATGCTGCCAGAATCTTCAGACAAGTAGGCAAAA

Ace file of the UniGene sp_v2.0_unigene56798

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA topoisomerase 2 (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RWX5_PHYPA	-	-	6.0e-19	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	dna topoisomerase ii	-	-	7.23238e-41	78%

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA	IPR001241	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA topoisomerase, type IIA, subunit B, domain 2	IPR013506	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-
Sma3	DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta	IPR013759	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE71

Fln msg: Distance to subject end: 356 aas, your sequence is shorter than subject: 79 - 435

Fln protein: MAIGTLTLEKVQQLCAERDKVEDDVEELKKATPKSLWCKDLDAFIWELEGQELQEAKDDEYELSNMGSDAARIFRQVGK

Protein Length: 80

Fln nts: GATTATGAGTATCTTCTTTCC_-_ATGGCTATAGGAACATTGACACTGGAAAAGGTCCAGCAATTATGTGCTGAGAGAGACAAGGTTGAGGATGATGTTGAGGAGCTCAAAAAGGCAACTCCTAAATCTCTATGGTGCAAAGATCTTGATGCCTTCATATGGGAGCTGGAAGGTCAAGAACTGCAGGAGGCCAAGGATGACGAGTATGAATTGAGCAACATGGGAAGTGATGCTGCCAGAATCTTCAGACAAGTAGGCAAAA

Fln Alignment:

AllPineV4_c56980___MAIGTLTLEKVQQLCAERDKVEDDVEELKKATPKSLWCKDLDAFIWELEGQELQEAKDDEYELSNMGSDAARIFRQVGK
D5AE71_______________MAIGTLTLEKVQQLCAERDKLEDDVEELKKETPKSLWCKDLDAFTKELDAQDLQEAKDDEYELSNMGNDAARIFRQVGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain