SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56765

Length: 339 nt

UniGene Fasta

>sp_v2.0_unigene56765
AGAATCCATGGCAACATGGAGCTAGCAAAACATGCAGCAGATCATCTTCTTGAGTTGGAACCCCATCGAAGTGGACCATATGTGCAGCTGTCCAACATCTATGCTGCCGCTGGTAGATGGGATGATAAAGCCAAGATTAGAAAGGTGATGAAAGACAAAGGAGTGAAGAAGGAAACAGGACACAGCTGGATCGAGATTAAGAATGAGGTGCATACATTCAGCACAGCAGATAGATCACATCCAGAAACAGAGAAAATCTACGCAAAATTGGTGGAACTAATTCATCAAATGAAGGACGCAGGTTATGCCCCTGATACAAAATTTGTGCTACATTACATC

Ace file of the UniGene sp_v2.0_unigene56765

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	pentatricopeptide repeat-containing protein	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 113 - 246

Fln protein: RIHGNMELAKHAADHLLELEPHRSGPYVQLSNIYAAAGRWDDKAKIRKVMKDKGVKKETGHSWIEIKNEVHTFSTADRSHPETEKIYAKLVELIHQMKDAGYAPDTKFVLHYI

Protein Length: 114

Fln nts: AGAATCCATGGCAACATGGAGCTAGCAAAACATGCAGCAGATCATCTTCTTGAGTTGGAACCCCATCGAAGTGGACCATATGTGCAGCTGTCCAACATCTATGCTGCCGCTGGTAGATGGGATGATAAAGCCAAGATTAGAAAGGTGATGAAAGACAAAGGAGTGAAGAAGGAAACAGGACACAGCTGGATCGAGATTAAGAATGAGGTGCATACATTCAGCACAGCAGATAGATCACATCCAGAAACAGAGAAAATCTACGCAAAATTGGTGGAACTAATTCATCAAATGAAGGACGCAGGTTATGCCCCTGATACAAAATTTGTGCTACATTACATC

Fln Alignment:

AllPineV4_c56943___RIHGNMELAKHAADHLLELEPHRSGPYVQLSNIYAAAGRWDDKAKIRKVMKDKGVKKETGHSWIEIKNEVHTFSTADRSHPETEKIYAKLVELIHQMKDAGYAPDTKFVLH
D5AAE0_______________RMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain