SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56675

Length: 426 nt

UniGene Fasta

>sp_v2.0_unigene56675
CAAATCTCTGGTGGATAGCAAGGGTGTTCATGGTTGTATCATCAAAATTGGATTCCAAGGAGGCACATTCATATGGAATCGGCTGATGGACACCTATATGAAATGTGGAAGCTTGGAGAATGCACGCCAGGTGTTTGACAAAATGTATACGAAGGATACAATTTCATGGAATACAATGATTGGGGGATATGCGAAATTTGGTAGTATTCAGGAGGCACGCCGACTGTTTGACAGAATGCCTGAGCAAAATGTGGTTTCTTGGAACGCTGTGATTGCGGGATATGCCGGACATGGGCATCCGGAGGAGGCCCTGGAACTTTTTAAACATATGCAAGTGGCAGGCTTCGAGTCGGACCGCATCACATATGCATGTGTTCTCAGTGTGTGTGCCAGTCTACTGTCTCTGCAGCAGGGTGAAGCAGACCA

Ace file of the UniGene sp_v2.0_unigene56675

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RGS8_RICCO	-	-	1.0e-24	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	pentatricopeptide repeat-containing	-	-	4.98621e-29	65%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD86

Fln msg: Distance to subject end: 349 aas, your sequence is shorter than subject: 141 - 514

Fln protein: KSLVDSKGVHGCIIKIGFQGGTFIWNRLMDTYMKCGSLENARQVFDKMYTKDTISWNTMIGGYAKFGSIQEARRLFDRMPEQNVVSWNAVIAGYAGHGHPEEALELFKHMQVAGFESDRITYACVLSVCASLLSLQQGEAD

Protein Length: 142

Fln nts: CAAATCTCTGGTGGATAGCAAGGGTGTTCATGGTTGTATCATCAAAATTGGATTCCAAGGAGGCACATTCATATGGAATCGGCTGATGGACACCTATATGAAATGTGGAAGCTTGGAGAATGCACGCCAGGTGTTTGACAAAATGTATACGAAGGATACAATTTCATGGAATACAATGATTGGGGGATATGCGAAATTTGGTAGTATTCAGGAGGCACGCCGACTGTTTGACAGAATGCCTGAGCAAAATGTGGTTTCTTGGAACGCTGTGATTGCGGGATATGCCGGACATGGGCATCCGGAGGAGGCCCTGGAACTTTTTAAACATATGCAAGTGGCAGGCTTCGAGTCGGACCGCATCACATATGCATGTGTTCTCAGTGTGTGTGCCAGTCTACTGTCTCTGCAGCAGGGTGAAGCAGACCA

Fln Alignment:

AllPineV4_c56845___SLVDSKGVHGCIIKIGFQGGTFIWNRLMDTYMKCGSLENARQVFDKMYTKDTISWNTMIGGYAKFGSIQEARRLFDRMPEQNVVSWNAVIAGYAGHGHPEEALELFKHMQVAGFESDR
D5AD86_______________SLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain