SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56658

Length: 310 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene56658
GCTCTGGACAAGTCTAGATATGTGGATTATATTTATAGCAACGGCTTGTGGTGCGGGAGGAGCTTTGACTGCAATCGATAATATGGGCCAGATTGGAAAGGCTCTTGGGTTCGATTCAGTGGGCATTAGTACCTTTGTGTCTCTCATAAGCATCTGGAATTTTCTAGGTCGAGTGGCATCAGGGTTTCTGTCAGAGAAAATCTTGAAAAAATATAATCTCCCCAGGCCTCTAATGCTCTCTGCTGTTCTCGCATTAGCCTGTGTAGGCCACCTCTTCATTGCTATTTGCATTGCCTGGTTCACTATATGT

Ace file of the UniGene sp_v2.0_unigene56658 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00083, Sugar_tr, Sugar (and other) transporter	-	-	5.0e-05	17%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	protein	-	-	3.70988e-27	78%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 103 - 626

Fln protein: LWTSLDMWIIFIATACGAGGALTAIDNMGQIGKALGFDSVGISTFVSLISIWNFLGRVASGFLSEKILKKYNLPRPLMLSAVLALACVGHLFIAICIAWFTIC

Protein Length: 104

Fln nts: GCTCTGGACAAGTCTAGATATGTGGATTATATTTATAGCAACGGCTTGTGGTGCGGGAGGAGCTTTGACTGCAATCGATAATATGGGCCAGATTGGAAAGGCTCTTGGGTTCGATTCAGTGGGCATTAGTACCTTTGTGTCTCTCATAAGCATCTGGAATTTTCTAGGTCGAGTGGCATCAGGGTTTCTGTCAGAGAAAATCTTGAAAAAATATAATCTCCCCAGGCCTCTAATGCTCTCTGCTGTTCTCGCATTAGCCTGTGTAGGCCACCTCTTCATTGCTATTTGCATTGCCTGGTTCACTATATGT

Fln Alignment:

AllPineV4_c56822___DMWIIFIXXXXXXXXXXXAIDNMGQIGKALGFDSVGISTFVSLISIWNFLGRVASGFLSEKILKKYNLPRPLMLSAVLALACVGHLFIAI
B8LRH5_______________DFWLLFFAFLCGVGTGMAVINNMGQIGLAMGF--VDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGVPRPVWMAASQLFMIVGYIFMAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain