SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56577

Length: 536 nt

UniGene Fasta

>sp_v2.0_unigene56577
AATGTGAATCGATGTAACTGGGAACCATCTTTCCGGAACAATACCTCCGACCCTTTGCTCTTCTGGCCAGTTGGAGCTTCTATTGTTGGGCAACAATTTGTTCGAAGGAAGGATTCCTCCAGAGATTGGAAACTGCCAGAGCTTAAGGCGGTTAAGACTCAGCCATAACCGTTTGACCGGTGTTATCCCTGTCCAGTTTCTGGGTTCGAATCTTCACATTGACTATCTGGATATGGCGGATAATAATTTGCAAGGTGAAATACCCTCAAGCATAGGGCAGAGCAAAAATTTGAGCTCCATTGACCTGTCCAGGAATAGATTGAGCGGCTCTATTCCTCCAGAACTGGGGCAACTCTCCAATCTCCAGCTACTCAATCTCTCTTCCAACAAACTGACGGGCCTGCTGCCTCCAGAACTTGGTAAATGTCATCTTTTGTATTCTGTTGACTTGGGTTTTAACTCACTGAATGGCTCAATACCAGAGCAGTTGGCAAACCTAAAGCAACTGGAATATCTAGTTCTTCAAGGCAATCAGT

Ace file of the UniGene sp_v2.0_unigene56577

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat receptor-like protein kinase PEPR1 n=2 Tax=Arabidopsis RepID=PEPR1_ARATH	-	-	5.0e-26	38%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	43%
Blast2go	leucine-rich repeat receptor-like protein kinase pepr1	-	-	5.24342e-31	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	5.24342e-31	64%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	5.24342e-31	64%
Blast2go	response to wounding	GO:0009611	Biological Process	5.24342e-31	64%
Blast2go	protein binding	GO:0005515	Molecular Function	5.24342e-31	64%
Blast2go	peptide receptor activity	GO:0001653	Molecular Function	5.24342e-31	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.24342e-31	64%

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 625 aas, your sequence is shorter than subject: 178 - 1145

Fln protein: M*IDVTGNHLSGTIPPTLCSSGQLELLLLGNNLFEGRIPPEIGNCQSLRRLRLSHNRLTGVIPVQFLGSNLHIDYLDMADNNLQGEIPSSIGQSKNLSSIDLSRNRLSGSIPPELGQLSNLQLLNLSSNKLTGLLPPELGKCHLLYSVDLGFNSLNGSIPEQLANLKQLEYLVLQGNQ

Protein Length: 179

Fln nts: AATGTGAATCGATGTAACTGGGAACCATCTTTCCGGAACAATACCTCCGACCCTTTGCTCTTCTGGCCAGTTGGAGCTTCTATTGTTGGGCAACAATTTGTTCGAAGGAAGGATTCCTCCAGAGATTGGAAACTGCCAGAGCTTAAGGCGGTTAAGACTCAGCCATAACCGTTTGACCGGTGTTATCCCTGTCCAGTTTCTGGGTTCGAATCTTCACATTGACTATCTGGATATGGCGGATAATAATTTGCAAGGTGAAATACCCTCAAGCATAGGGCAGAGCAAAAATTTGAGCTCCATTGACCTGTCCAGGAATAGATTGAGCGGCTCTATTCCTCCAGAACTGGGGCAACTCTCCAATCTCCAGCTACTCAATCTCTCTTCCAACAAACTGACGGGCCTGCTGCCTCCAGAACTTGGTAAATGTCATCTTTTGTATTCTGTTGACTTGGGTTTTAACTCACTGAATGGCTCAATACCAGAGCAGTTGGCAAACCTAAAGCAACTGGAATATCTAGTTCTTCAAGGCAATCAGT

Fln Alignment:

AllPineV4_c56732___IDVTGNHLSGTIPPTLCSSGQXXXXXXXXXXXXXRIPPEIGNCQXXXXXXXXXXXXTGVIPVQFLGSNLHIDYLDMADNNLQGEIPSSIGQSKNLSSIDLSRNRLSGSIPPELGXXXXXXXXXXXXXKLTGLLPPELGKCHLLYSVDLGFNSLNGSIPEQLANLKQLEYLVLQGNQ
Q9FEU2_______________VDLSTNSLSGSIPDSFGSLKNLSELEITDNNVSGSIPAALANCTELTQIQLYNNQISGQMPAE-LGALKKLTVLFLWQNNLEGPIPSSLGSCDNLQSLDLSHNRLTGSIPPSLFEIKNLTKLLLLSNELTGALPPEIGNCVALSRLRLGNNRLLNQIPREIGKLENLVFLDLAMNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain