SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56563

Length: 296 nt

Origin of reads: Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene56563
CTGTTGGCTACAAACCGTTTTAGTGGGAACATTCCTCCAGAGCTTGGAAATTGCACTTCTGTATATCATATAAGCCTGAGTAACAATCAATTATCAGGACACATTCCTCCAGAGCTTTGCAATGCCAAACCTCTTAGTGAGATTGATTTGGAAAACAATCTTCTTGTAGGGGACATTGGAAACACGTTCATCAATTGCAGGAACCTCACCAGTTGATATTGACAAACAATAGGGTGAACGGTAGAATTCCCGCTTATCTAGGGGAGCTTCCGTTGATGGTTCTGGATTTGGATGAG

Ace file of the UniGene sp_v2.0_unigene56563 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat receptor protein kinase EXS [Arabidopsis thaliana] sp\|Q9LYN8.1\|EXS_ARATH RecName: Full=Leucine-rich repeat receptor protein kinase EXS; AltName: Full=Extra sporogenous cells protein; AltName: Full=Protein EXCESS MICROSPOROCYTES 1; Flag	-	-	1.0e-17	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	protein	-	-	1.08826e-26	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	1.08826e-26	72%
Blast2go	tapetal cell fate specification	GO:0010234	Biological Process	1.08826e-26	72%
Blast2go	transferase activity	GO:0016740	Molecular Function	1.08826e-26	72%
Blast2go	protein binding	GO:0005515	Molecular Function	1.08826e-26	72%
Blast2go	membrane	GO:0016020	Cellular Component	1.08826e-26	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Separated hits, possible frame ERROR between 177 and 213, Distance to subject end: 519 aas, your sequence is shorter than subject: 99 - 946

Fln protein: LLATNRFSGNIPPELGNCTSVYHISLSNNQLSGHIPPELCNAKPLSEIDLENNLLVGDxxxxxxxxxxxxxLILTNNRVNGRIPAYLGELPLMVLDLDE

Protein Length: 100

Fln nts: CTGTTGGCTACAAACCGTTTTAGTGGGAACATTCCTCCAGAGCTTGGAAATTGCACTTCTGTATATCATATAAGCCTGAGTAACAATCAATTATCAGGACACATTCCTCCAGAGCTTTGCAATGCCAAACCTCTTAGTGAGATTGATTTGGAAAACAATCTTCTTGTAGGGGACATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTGATATTGACAAACAATAGGGTGAACGGTAGAATTCCCGCTTATCTAGGGGAGCTTCCGTTGATGGTTCTGGATTTGGATGAG

Fln Alignment:

AllPineV4_c56714___LLATNRFSGNIPPELGNCTSVYHISLSNNQLSGHIPPELCNAKPLSEIDLENNLLVGDIxxxxxxxxxxxxLILTNNRVNGRIPAYLGEL
C0PTA1_______________ILSRNNLVGPIPKGIGNCTFLTFFSAHSNNLCGTVPASLAYCTNLKLIDLSSNNFTGELxxxxxxxxxxxxLSLSSNRLSGSIPHHLGNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain