SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56524

Length: 1945 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene56524
ATGGGGATTTTCTCACCATACATCTGAAGGGTCCATAATAACTAGTAATCCATTATAAATTGGTGTTGCACTTCTTCGTTGTAAGTGCAGAACTCCAATACACTTTAGTTGGAGCCCAGTGATCCCCTTTGCCTTTACTCATTCAAGTTATATTCACAGGAAAGCTTGTATATACACTGGTTGAAGTATATGCACAGATTCACTGTGTATATACAGAGAATGCAATAGGATGCCCTTCCAGGACGTCTATGCTATTATTACTCGCCGAGCTCCAGCACAGCTCGCGTGCAAAGAGCAGAGGCAGATGATCAGCAGAAACACTCACAGATCTTGGAATGGAGTTCATATCGGAGAGCAAGGTCTTGGATTAGAAATTGCACAGAGAGCGGGTTGAATAGGGGTATAGCTTTAACCCACACGAGTTTGTGGTCTTCTTTTAGCAGAGATGGAGATGAAGCCCAATATTCTGATGGGGAGGTACGAATTAGGGCGCCTGCTTGGGCAAGGAACGTTCGCCAAGGTCTACTATGCCAGAAATTTGAAGACAGGAGAGAGCGTAGCCATTAAAGCCATGGAGAAGGAAAAAATCCTCAAGGTCGGTATGATGGAGCAAATTAAACGGGAAGTGTCGACTATGAGACTGGTCCGACACCCTAACATTGTTAGACTCTATGAAGTCATGGCGAGCAAGACCAAGATTTACTTTGTGATGGAGTATGTTAAGGGCGGTGAGCTCTTCAACAGGGTTGCAGACAAGGGGAAACTGAAGGAGGAGGAGGCGAGGAAGTATTTTCAGCAACTGATTAGCGCGGTGGATTTTTGCCACAGCCGGGGAGTGTACCACCGGGACTTGAAGCCGGAAAACTTGTTATTAGACGACAACGGGAATGTTAAGGTCTCCGACTTCGGGCTGAGCGCGCTGCCGGAGCAGTTCAGGAAGGACGGCCTTCTGCACACGACGTGCGGCACGCCTGCGTATGTTGCGCCCGAAGTTATCACCAAGAAGGGCTATGACGGTGCCGTGGCCGACATTTGGTCATGCGGGGTCATACTGTTCGTCCTCATGGCGGGCTACTTGCCGTTCCAGGACGCGAATCTGATGATCATGTATAAGAAGATCCACAAGGGAGACTACAAGTGCCCGCCCTGGTTTTCCTCTGAAGTCCGCCGGCTCGTCCTCCGGTTGCTAGACCCTAATCCCCAGACGAGGGTCACTGTCCCGCAGCTGATGGAGGTCCCTTGGTTCCGCCGGGGCTTCCAGCGCCCGCAGGCCGATAAAGACGTCACTGTCGATCTCCTCGATGATGTTGACTCTGCGTTTTCCGTGCTGAAGCCGGCCTGCTTGAACGCCTTCGACATAATCTCCCTCTCGCCGGGGTTCAATCTCTCAGGGCTGTTCAAGGACGATGTGTTGAAGCAGGAGGAGGAGTCGCGGTTCACTTCGACTCAGCCAGCGTCGAGCATAGTGTCGAAGCTGGAGGAGATTGCAAGCCTATTCCGGTTCAGCTTCAAGAAGTCAAAAGACTTCAAAATGAAGTTGCAGGGGTCGGAGGAGGGGCGGAAGGGGCACTTGCTATTGATGCTGAGATTTTGAGGTCACTCCCTCGTTCTTCATGGTAGAGCTTCGGAAAACCGGCGGGGATACCCTGGAATACAGTAAGTTCTGCAGGCAAGATCTAAGGCCCGGCCTCAAAGACATTGTGTGGACATGGGATGGCACTAGACAGGAGAAATAATAAAATCATTGTTCAATTTCCCTGATTTGATTTGTATCGTTGGCATGTTATTTTTCTTAGAAAACAGTGTAGCCAGAACAGAGTAAATCTTGTGCTAGCGAGTAGGACTGCGAACCATATTTGAAGCCATGAAACCTTTACAATATGGAAGCCAAATAAGGAGTACCAGAGTACAACTTCTTTTCTTGTAAATTTGTAAAAGCAAATGA

Ace file of the UniGene sp_v2.0_unigene56524 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 16 n=2 Tax=Vitis vinifera RepID=C4P7W5_VITVI	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	serine-threonine kinase	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	NAF domain	IPR004041	-	-
Sma3	NAF/FISL domain	IPR018451	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9K4

Fln msg: Separated hits, possible frame ERROR between 1573 and 1590,

Fln protein: MEMKPNILMGRYELGRLLGQGTFAKVYYARNLKTGESVAIKAMEKEKILKVGMMEQIKREVSTMRLVRHPNIVRLYEVMASKTKIYFVMEYVKGGELFNRVADKGKLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDDNGNVKVSDFGLSALPEQFRKDGLLHTTCGTPAYVAPEVITKKGYDGAVADIWSCGVILFVLMAGYLPFQDANLMIMYKKIHKGDYKCPPWFSSEVRRLVLRLLDPNPQTRVTVPQLMEVPWFRRGFQRPQADKDVTVDLLDDVDSAFSVLKPACLNAFDIISLSPGFNLSGLFKDDVLKQEEESRFTSTQPASSIVSKLEEIASLFRFSFKKSKDFKMKLQGSEEGRKGHxxxxxxxFEVTPSFFMVELRKTGGDTLEYSKFCRQDLRPGLKDIVWTWDGTRQEK*

Protein Length: 432

Fln nts: ATGGGGATTTTCTCACCATACATCTGAAGGGTCCATAATAACTAGTAATCCATTATAAATTGGTGTTGCACTTCTTCGTTGTAAGTGCAGAACTCCAATACACTTTAGTTGGAGCCCAGTGATCCCCTTTGCCTTTACTCATTCAAGTTATATTCACAGGAAAGCTTGTATATACACTGGTTGAAGTATATGCACAGATTCACTGTGTATATACAGAGAATGCAATAGGATGCCCTTCCAGGACGTCTATGCTATTATTACTCGCCGAGCTCCAGCACAGCTCGCGTGCAAAGAGCAGAGGCAGATGATCAGCAGAAACACTCACAGATCTTGGAATGGAGTTCATATCGGAGAGCAAGGTCTTGGATTAGAAATTGCACAGAGAGCGGGTTGAATAGGGGTATAGCTTTAACCCACACGAGTTTGTGGTCTTCTTTTAGCAGAG_-_ATGGAGATGAAGCCCAATATTCTGATGGGGAGGTACGAATTAGGGCGCCTGCTTGGGCAAGGAACGTTCGCCAAGGTCTACTATGCCAGAAATTTGAAGACAGGAGAGAGCGTAGCCATTAAAGCCATGGAGAAGGAAAAAATCCTCAAGGTCGGTATGATGGAGCAAATTAAACGGGAAGTGTCGACTATGAGACTGGTCCGACACCCTAACATTGTTAGACTCTATGAAGTCATGGCGAGCAAGACCAAGATTTACTTTGTGATGGAGTATGTTAAGGGCGGTGAGCTCTTCAACAGGGTTGCAGACAAGGGGAAACTGAAGGAGGAGGAGGCGAGGAAGTATTTTCAGCAACTGATTAGCGCGGTGGATTTTTGCCACAGCCGGGGAGTGTACCACCGGGACTTGAAGCCGGAAAACTTGTTATTAGACGACAACGGGAATGTTAAGGTCTCCGACTTCGGGCTGAGCGCGCTGCCGGAGCAGTTCAGGAAGGACGGCCTTCTGCACACGACGTGCGGCACGCCTGCGTATGTTGCGCCCGAAGTTATCACCAAGAAGGGCTATGACGGTGCCGTGGCCGACATTTGGTCATGCGGGGTCATACTGTTCGTCCTCATGGCGGGCTACTTGCCGTTCCAGGACGCGAATCTGATGATCATGTATAAGAAGATCCACAAGGGAGACTACAAGTGCCCGCCCTGGTTTTCCTCTGAAGTCCGCCGGCTCGTCCTCCGGTTGCTAGACCCTAATCCCCAGACGAGGGTCACTGTCCCGCAGCTGATGGAGGTCCCTTGGTTCCGCCGGGGCTTCCAGCGCCCGCAGGCCGATAAAGACGTCACTGTCGATCTCCTCGATGATGTTGACTCTGCGTTTTCCGTGCTGAAGCCGGCCTGCTTGAACGCCTTCGACATAATCTCCCTCTCGCCGGGGTTCAATCTCTCAGGGCTGTTCAAGGACGATGTGTTGAAGCAGGAGGAGGAGTCGCGGTTCACTTCGACTCAGCCAGCGTCGAGCATAGTGTCGAAGCTGGAGGAGATTGCAAGCCTATTCCGGTTCAGCTTCAAGAAGTCAAAAGACTTCAAAATGAAGTTGCAGGGGTCGGAGGAGGGGCGGAAGGGGCACTTxxxxxxxxxxxxxxxxxxTTTTGAGGTCACTCCCTCGTTCTTCATGGTAGAGCTTCGGAAAACCGGCGGGGATACCCTGGAATACAGTAAGTTCTGCAGGCAAGATCTAAGGCCCGGCCTCAAAGACATTGTGTGGACATGGGATGGCACTAGACAGGAGAAATAA___TAAAATCATTGTTCAATTTCCCTGATTTGATTTGTATCGTTGGCATGTTATTTTTCTTAGAAAACAGTGTAGCCAGAACAGAGTAAATCTTGTGCTAGCGAGTAGGACTGCGAACCATATTTGAAGCCATGAAACCTTTACAATATGGAAGCCAAATAAGGAGTACCAGAGTACAACTTCTTTTCTTGTAAATTTGTAAAAGCAAATGA

Fln Alignment:

AllPineV4_c56671___MEMKPNILMGRYELGRLLGQGTFAKVYYARNLKTGESVAIKAMEKEKILKVGMMEQIKREVSTMRLVRHPNIVRLYEVMASKTKIYFVMEYVKGGELFNRVADKGKLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDDNGNVKVSDFGLSALPEQFRKDGLLHTTCGTPAYVAPEVITKKGYDGAVADIWSCGVILFVLMAGYLPFQDANLMIMYKKIHKGDYKCPPWFSSEXXXXXXXXLDPNPQTRVTVPQLMEVPWFRRGFQRPQAXXXXXXXXXXXXDSAFSVLKPACLNAFDIISLSPGFNLSGLFKDDVLKQEEESRFTSTQPASSIVSKLEEIAXXXXXXXXXXXXXXXKLQGSEEGRKGHLxxxxxxFEVTPSFFMVELRKTGGDTLEYSKFCRQDLRPGLKDIVWTWDGTRQEK
D5A9K4_______________MEMKSNILMGRYELGRLLGQGTFAKVYYARNLKTGESVAIKVMAKEKILKVGMIEQIKREVSVMRLVRHPNIVRLYEVMASKTKIYFVMEYVKGGELFNRVADKGKLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDDNGVVKVSDFGLSALPEQFRQDGLLHTACGTPAYVAPEVITKKGYDGATADIWSCGVILFVLMAGYLPFQDANLMVMYKKIYKGDYKCPPWFSSEVRRLVLRLLDPNPRTRITVPQLMEVPWFRRGFKRPQADKDVNVGVLDDVDSAFFVPKPACLNAFDIISLSPGFNLSGLFKDDVLKQEEESRFTSTQPASSIMSKLEEIASLFRFSFKKSKDFKMKLQGSEQGRKGHLxxxxxxFEVTPSFFMVELRKTGGDTLEYSKFCSQDLRPGLKDIVWTWDGNRQEK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1837	42		57		1.0
1916		33		66	0.997464
1918		33		66	0.997464
1919	33		66		0.997464
1920			66	33	0.997464
1921	66			33	0.997464

SSRs (tot: 1)

Start position	End position	Sequence	Length
1167	1178	CCT CCT CCT CCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain