SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56473

Length: 452 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene56473
GTTCCCTCCAGAACGTCGTGACTTGGCTGTCACTCAAGTTTCAGAAAATTACATTGCAAGCTTCCAAACCTGAGGTAGCAGGTCCATCTCAGGTTCAAGCTCCTCCTATATCCAGTAAAAATTGGTTTTTCCTCGCCGTCCTGGGAAAGGTCAAACAGGCATCAAGTGCCTTGTGAAGGCAAATCACTTTATTACAGAGTTACCGGAAAAGGATCTTCACCAATACGATGTGACTATAAAACCTGAGGTGACTTCACGAGGTCTCAACAGATCTGTTATCAGACAACTAGTCAACCAATACAGAGATACCCATTTGGGTAAAAGGCTTCCTGTTTATGATGGTCGAAGAAGTCTGTACACAGCTGGGCCATTGCCCTTTACCTCAAAGGAATTTAACATCTTGCTTGTTGAGGGGGACGATGGACCTGGTGGTCCAAGAAGGGAGCGACATT

Ace file of the UniGene sp_v2.0_unigene56473

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9SJV6_RICCO	-	-	2.0e-38	76%
FL-Next	sp=Protein argonaute 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	74%
Blast2go	protein argonaute	-	-	3.22299e-44	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin metabolic process	GO:0009850	Biological Process	3.22299e-44	85%
Blast2go	adventitious root development	GO:0048830	Biological Process	3.22299e-44	85%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	3.22299e-44	85%
Blast2go	stem cell development	GO:0048864	Biological Process	3.22299e-44	85%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	3.22299e-44	85%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	3.22299e-44	85%
Blast2go	response to far red light	GO:0010218	Biological Process	3.22299e-44	85%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	3.22299e-44	85%
Blast2go	gene silencing by miRNA	GO:0035195	Biological Process	3.22299e-44	85%
Blast2go	RNA interference	GO:0016246	Biological Process	3.22299e-44	85%
Blast2go	miRNA binding	GO:0035198	Molecular Function	3.22299e-44	85%
Blast2go	endoribonuclease activity	GO:0004521	Molecular Function	3.22299e-44	85%
Blast2go	protein binding	GO:0005515	Molecular Function	3.22299e-44	85%
Blast2go	siRNA binding	GO:0035197	Molecular Function	3.22299e-44	85%
Blast2go	cytosol	GO:0005829	Cellular Component	3.22299e-44	85%
Blast2go	nucleus	GO:0005634	Cellular Component	3.22299e-44	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O04379

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 762 aas, your sequence is shorter than subject: 150 - 1048

Fln protein: FPPERRDLAVTQVSENYIASFQT*GSRSISGSSSSYIQ*KLVFPRRPGKGQTGIKCLVKANHFITELPEKDLHQYDVTIKPEVTSRGLNRSVIRQLVNQYRDTHLGKRLPVYDGRRSLYTAGPLPFTSKEFNILLVEGDDGPGGPRRERH

Protein Length: 151

Fln nts: GTTCCCTCCAGAACGTCGTGACTTGGCTGTCACTCAAGTTTCAGAAAATTACATTGCAAGCTTCCAAACCTGAGGTAGCAGGTCCATCTCAGGTTCAAGCTCCTCCTATATCCAGTAAAAATTGGTTTTTCCTCGCCGTCCTGGGAAAGGTCAAACAGGCATCAAGTGCCTTGTGAAGGCAAATCACTTTATTACAGAGTTACCGGAAAAGGATCTTCACCAATACGATGTGACTATAAAACCTGAGGTGACTTCACGAGGTCTCAACAGATCTGTTATCAGACAACTAGTCAACCAATACAGAGATACCCATTTGGGTAAAAGGCTTCCTGTTTATGATGGTCGAAGAAGTCTGTACACAGCTGGGCCATTGCCCTTTACCTCAAAGGAATTTAACATCTTGCTTGTTGAGGGGGACGATGGACCTGGTGGTCCAAGAAGGGAGCGACATT

Fln Alignment:

AllPineV4_c56613___FPRRPGKGQTGIKCLVKANHFITELPEKDLHQYDVTIKPEVTSRGLNRSVIRQLVNQYRDTHLGKRLPVYDGRRSLYTAGPLPFTSKEFNILLV
O04379_______________FPMRPGKGQSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYRDSHLGSRLPAYDGRKSLYTAGPLPFNSKEFRINLL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
107		66	33		0.997461
110		66	33		0.997461
113			33	66	0.997461
115		33		66	0.997461
123	66			33	0.997476
124	66		33		0.997476
125	66			33	0.997467
126	66	33			0.997464
130		33	66		0.997476
131	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain