SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56461

Length: 464 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene56461
AAGTCCTGCTCATGGACGCTGCAGGTCTGGTTCTCCTCACACTTCGACGCAAGAGGCTGAGTCTGCATAATGAATGGCAAGGTTTCCTGGGCGAATTGCAAAACGCTCAAAAACCATTGTTTGTGGCGAGAAGATCGCTCTCTCTGTTTATTCCCACAAATAATTTAGCAGAAGTGTACGTGCTTTCACCCGGTATAAGAAAGACGAAGGGGCACTCTGACTACCATATCAAAGGATGTTATACCAAGCGTTCCATCACTTTTCTGAATAGTTTTGGCGACGTTGTTGCAGAGGTGAAGCCAAAACAGGTGAGATCTAATCAAATAAATCTTGGCGGAGACGTGTTCAATCTGGTAGTGCGGCCTGGCTATGACCTAGCTTTTGTTATGGGGTTGATTATCATTCTGGATCAGATGATGCCCTCGAACTGATCTGGGGTTGCAGATTGCACGCAGTGCTAGAAT

Ace file of the UniGene sp_v2.0_unigene56461

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RV68_RICCO	-	-	4.0e-24	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	protein lurp-one-related 12	-	-	0.0	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	LURP1-like domain	IPR007612	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZY9

Fln msg: your sequence is shorter than subject: 143 - 208

Fln protein: VLLMDAAGLVLLTLRRKRLSLHNEWQGFLGELQNAQKPLFVARRSLSLFIPTNNLAEVYVLSPGIRKTKGHSDYHIKGCYTKRSITFLNSFGDVVAEVKPKQVRSNQINLGGDVFNLVVRPGYDLAFVMGLIIILDQMMPSN*

Protein Length: 144

Fln nts: AAGTCCTGCTCATGGACGCTGCAGGTCTGGTTCTCCTCACACTTCGACGCAAGAGGCTGAGTCTGCATAATGAATGGCAAGGTTTCCTGGGCGAATTGCAAAACGCTCAAAAACCATTGTTTGTGGCGAGAAGATCGCTCTCTCTGTTTATTCCCACAAATAATTTAGCAGAAGTGTACGTGCTTTCACCCGGTATAAGAAAGACGAAGGGGCACTCTGACTACCATATCAAAGGATGTTATACCAAGCGTTCCATCACTTTTCTGAATAGTTTTGGCGACGTTGTTGCAGAGGTGAAGCCAAAACAGGTGAGATCTAATCAAATAAATCTTGGCGGAGACGTGTTCAATCTGGTAGTGCGGCCTGGCTATGACCTAGCTTTTGTTATGGGGTTGATTATCATTCTGGATCAGATGATGCCCTCGAACTGA___TCTGGGGTTGCAGATTGCACGCAGTGCTAGAAT

Fln Alignment:

AllPineV4_c56597___VLLMDAAGLVLLTLRRKR-LSLHNEWQGFLGELQNAQKPLFVARRSLSLFIPTNNLAEVYVLSPGIRKTKGHSDYHIKGCYTKRSITFLNSFGDVVAEVKPKQVRSNQINLGGDVFNLVVRPGYDLAFVMGLIIILDQMMPS
A9NZY9_______________IVLMDAAGMALLTIRRKSWLSLQNQWKGFLGEFRDGKKPLFVVRRVTSLLIPTKTLAEVYMCSSAKRKGKPQFDYRVEGYYAKRSFTILNSLNKVVAEVKPKQVRS-EITLGGDVFNLTVNPGYDQAFVMGLIVVLDQMMPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain