SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56363

Length: 386 nt

UniGene Fasta

>sp_v2.0_unigene56363
TGCGGAACCATGCTAACATGGATGGAGGCATGCAGTGTTGTTGTATTCCAAGTCCCCTGCAACCCACAAAGGAGCTCCACGAAAGCAACTAATTGGATTTCGAAGTGTTCATGTCGAAGGTAAACACACAGCCAAAGTTACGTTTGTTGTTAAGCCCTGTGATCACTTCAGCACTGTAAAGGAGAACGGGGAAAGAGTTTTGACCATTGGTTCCCATTCCCTGATGGTTGGTGACGCCCGACATCCAGTTTCACTTGTCACAAAGCATTTGAAGGGAATTTCATAGTACCACTACCTAAAGGGATGATTGCTTCATGACAATACTAGATTTCACTTGTTATGAAGCATTTGAATGGTAATATCACTACCTAAATGGATGGATGGAT

Ace file of the UniGene sp_v2.0_unigene56363

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-xylosidase, putative n=2 Tax=Oryza sativa RepID=Q53MR3_ORYSJ	-	-	3.0e-14	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	alpha-l-arabinofuranosidase beta-d-xylosidase	-	-	1.4013e-44	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	1.4013e-44	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	0.0	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 95 - 304

Fln protein: AEP**HGWRHAVLLYSKSPATHKGAPRKQLIGFRSVHVEGKHTAKVTFVVKPCDHFSTVKENGERVLTIGSHSLMVGDARHPVSLVTKHLKGIS*

Protein Length: 96

Fln nts: TGCGGAACCATGaTAACATGGATGGAGGCATGCAGTGTTGTTGTATTCCAAGTCCCCTGCAACCCACAAAGGAGCTCCACGAAAGCAACTAATTGGATTTCGAAGTGTTCATGTCGAAGGTAAACACACAGCCAAAGTTACGTTTGTTGTTAAGCCCTGTGATCACTTCAGCACTGTAAAGGAGAACGGGGAAAGAGTTTTGACCATTGGTTCCCATTCCCTGATGGTTGGTGACGCCCGACATCCAGTTTCACTTGTCACAAAGCATTTGAAGGGAATTTCATAG___TACCACTACCTAAAGGGATGATTGCTTCATGACAATACTAGATTTCACTTGTTATGAAGCATTTGAATGGTAATATCACTACCTAAATGGATGGATGGAT

Fln Alignment:

AllPineV4_c56483___RHAVLLYSKSPATHKGAPRKQLIGFRSVHVEGKHTAKVTFVVKPCDHFSTVKENGERVLTIGSHSLMVGDARHPVSLVTKHL
D5ABI5_______________RHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSLVTKHL

SSRs (tot: 1)

Start position	End position	Sequence	Length
373	386	ATGG ATGG ATGG AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain