SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56358

Length: 485 nt

UniGene Fasta

>sp_v2.0_unigene56358
GCATTCCACAAAAACTGGGCCTTCTCACCCATCTGCAAGGTCTTTACCTTGATACAAATGAATTCTCTGGCAGGATTCCCCCCTTCATTGTCCAATATCTCTACTTTGACTAGTTTGGGCATTTCCCGAAACAAATTGAGAGGGCACATTCCATTAGAATTTTGTGCCAAACTCAACTATTTGAATTCTCTCTCTTTATGGGGAAATCAACTTATTGGGAACATACCATATACCATTGGGAATTGTTCCAAACTTGAAGTACTTTATCTATCCTACAATACGTTGAGTGGGAGTGTTCCAATAGAGTTGGGTAACCTTTTCCTCCTTGAAGAATTATACTTGCATAATAATGAGCTTGAGAGTGGTAGCACCACAAAGATCCCCTTTCTTGTATCTATTACAAATTGTTCTAAGTTAAAAGAACTACACTTGAGTGACAATAAACTAAGTGGTGTCTTGCCCCTTTCCATAGGGAGACTTTCTAC

Ace file of the UniGene sp_v2.0_unigene56358

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR receptor-like serine/threonine-protein kinase EFR [Arabidopsis thaliana] sp\|C0LGT6.1\|EFR_ARATH RecName: Full=LRR receptor-like serine/threonine-protein kinase EFR; AltName: Full=Elongation factor Tu receptor; Short=EF-Tu receptor; Flags: Precursor gb\|	-	-	4.0e-17	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at3g47570-like	-	-	4.23075e-27	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	4.23075e-27	58%
Blast2go	regulation of anion channel activity	GO:0010359	Biological Process	4.23075e-27	58%
Blast2go	defense response signaling pathway, resistance gene-independent	GO:0010204	Biological Process	4.23075e-27	58%
Blast2go	immune response-regulating signaling pathway	GO:0002764	Biological Process	4.23075e-27	58%
Blast2go	detection of bacterium	GO:0016045	Biological Process	4.23075e-27	58%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 161 - 551

Fln protein: AFHKNWAFSPICKVFTLIQMNSLAGFPPSLSNISTLTSLGISRNKLRGHIPLEFCAKLNYLNSLSLWGNQLIGNIPYTIGNCSKLEVLYLSYNTLSGSVPIELGNLFLLEELYLHNNELESGSTTKIPFLVSITNCSKLKELHLSDNKLSGVLPLSIGRLS

Protein Length: 162

Fln nts: GCATTCCACAAAAACTGGGCCTTCTCACCCATCTGCAAGGTCTTTACCTTGATACAAATGAATTCTCTGGCAGGATTCCCCCCTTCATTGTCCAATATCTCTACTTTGACTAGTTTGGGCATTTCCCGAAACAAATTGAGAGGGCACATTCCATTAGAATTTTGTGCCAAACTCAACTATTTGAATTCTCTCTCTTTATGGGGAAATCAACTTATTGGGAACATACCATATACCATTGGGAATTGTTCCAAACTTGAAGTACTTTATCTATCCTACAATACGTTGAGTGGGAGTGTTCCAATAGAGTTGGGTAACCTTTTCCTCCTTGAAGAATTATACTTGCATAATAATGAGCTTGAGAGTGGTAGCACCACAAAGATCCCCTTTCTTGTATCTATTACAAATTGTTCTAAGTTAAAAGAACTACACTTGAGTGACAATAAACTAAGTGGTGTCTTGCCCCTTTCCATAGGGAGACTTTCTAC

Fln Alignment:

AllPineV4_c56477___CKVFTLIQMNSL----AGFPPSLSNISTLTSLGISRNKLRGHIPLEFCAKLNYLNSLSLWGNQLIGNIPYTIGNCSKLEVLYLSYNTLSGSVP-------IXXXXXXXXXXXXXXXXXXXSGSTTKIPFLV------------SITNCSKLKELHLSDNKLSGVLPLSIGRL
B8LRW5_______________CRLLKIISLSNNFLLNGSIPSELGLLRNLKFLWLGINKLTGSIPASF-GNMSSLKNFSLGYNQLHGSIPSELGRLSQLNALYLHHNYFSGQIPPSLSNCTLLLDLQLHANQLTGHIPWEFGGRLSQLENLFLWGNKLRGEIPKTLANCSHLRVLDLTDNQLTGTVPVELGRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain