SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56334

Length: 302 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene56334
TCTGTTTGAAGCATTGGGCGAGCAGAACAAGAGTGTGCAGAGCGGATCTGCAATGTGCCTCTCGAAGCTCATTGAGAATGCCAAAGACCCGCAGTGGGAGCTTTCCAGCGACTCAGCCCGCGTATTTGCAAGTATTTGAGCAATCCCAACTTCTTGGCTAAGGCATATTTGCTTCCTGTCATTGCGAGTCTTGCTCAGGTTGGAGCTCTTTCTCAACAGTATTTGGCAATATTGATGCCGTGCATTCACGAATCCCTTGAAAGTACAGATTGGGCCACTCGTAAAGCAGCAGCTGATACTTT

Ace file of the UniGene sp_v2.0_unigene56334 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Potyviral helper component protease-interacting protein 2 n=2 Tax=Solanum RepID=Q84VS2_SOLTU	-	-	8.0e-26	66%
FL-Next	sp=Microtubule-associated protein TORTIFOLIA1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Blast2go	microtubule-associated protein tortifolia1	-	-	4.05258e-26	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	4.05258e-26	75%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	4.05258e-26	75%
Blast2go	circumnutation	GO:0010031	Biological Process	4.05258e-26	75%
Blast2go	microtubule binding	GO:0008017	Molecular Function	4.05258e-26	75%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	4.05258e-26	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	HEAT	IPR000357	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9T041

Fln msg: Overlapping hits, possible frame ERROR between 91 and 88, Distance to subject end: 588 aas, your sequence is shorter than subject: 100 - 864

Fln protein: LFEALGEQNKSVQSGSAMCLSKLIENAKxxxVGAFQRLSPRICKYLSNPNFLAKAYLLPVIASLAQVGALSQQYLAILMPCIHESLESTDWATRKAAADT

Protein Length: 101

Fln nts: TCTGTTTGAAGCATTGGGCGAGCAGAACAAGAGTGTGCAGAGCGGATCTGCAATGTGCCTCTCGAAGCTCATTGAGAATGCCAAAxxxxxxxxxGTGGGAGCTTTCCAGCGACTCAGCCCGCGTATTTGCAAGTATTTGAGCAATCCCAACTTCTTGGCTAAGGCATATTTGCTTCCTGTCATTGCGAGTCTTGCTCAGGTTGGAGCTCTTTCTCAACAGTATTTGGCAATATTGATGCCGTGCATTCACGAATCCCTTGAAAGTACAGATTGGGCCACTCGTAAAGCAGCAGCTGATACTTT

Fln Alignment:

AllPineV4_c56447___LFEALGEQNKSVQSGSAMCLSKLIENAKDxAVGAFQRLSPRICKYLSNPNFLAKAYLLPVIASLAQVGALSQQYLAILMPCIHESLESTDWATRKAAADT
Q9T041_______________LFEAMGEQNKVVQSGASMCMARMVESAASxPVTSFQKLCPRICKLLSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAET

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain