SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56181

Length: 329 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene56181
AAGTGCTTTGCGTGCAATTCTTGGGCTAGGGAAAGAAAACATAAATAGAAGACGGCAGTGTTTGTTCGGTTTAGGTTTCTCTGAAAATCAAATTTCTGATTTATTTAGGAAGCAGCCGTCGATTCTCCGCATGAGAGAGGAAAAACTGAAGTTTGCTGTGGCTTTTATGGTGAACATCGTGGGTCTTCCATTGGCTGATCTTGTTAAGAATCCTAGATTGATCGGATTCAGCGTGGAGACAAGAATAATTCCTAGGTATAGAGTAATCGAGGCATTGAAGTCTATGCATGTGCAAGCGCCAAGGAAAAAAAGGGCTAGTTATGTGACGA

Ace file of the UniGene sp_v2.0_unigene56181 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] dbj\|BAA97307.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED97974.1\| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]	-	-	2.0e-09	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	protein	-	-	7.05121e-36	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMF9

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 109 - 174

Fln protein: SALRAILGLGKENINRRRQCLFGLGFSENQISDLFRKQPSILRMREEKLKFAVAFMVNIVGLPLADLVKNPRLIGFSVETRIIPRYRVIEALKSMHVQAPRKKRASYVT

Protein Length: 110

Fln nts: AAGTGCTTTGCGTGCAATTCTTGGGCTAGGGAAAGAAAACATAAATAGAAGACGGCAGTGTTTGTTCGGTTTAGGTTTCTCTGAAAATCAAATTTCTGATTTATTTAGGAAGCAGCCGTCGATTCTCCGCATGAGAGAGGAAAAACTGAAGTTTGCTGTGGCTTTTATGGTGAACATCGTGGGTCTTCCATTGGCTGATCTTGTTAAGAATCCTAGATTGATCGGATTCAGCGTGGAGACAAGAATAATTCCTAGGTATAGAGTAATCGAGGCATTGAAGTCTATGCATGTGCAAGCGCCAAGGAAAAAAAGGGCTAGTTATGTGACGA

Fln Alignment:

AllPineV4_c56275___ALRAILGLGKENINRRRQCLFGLGFSENQISDLFRKQPSILRMREEKLKFAVAFMVNIVGLPLADLVKNPRLIGFSVETRIIPRYRVIEALKSMHV--QAPRKK
B8LMF9_______________AVRPILGLGQEKLDRRRQCLRSLGFSENQILDIWRKKPSSLGITEEKIKRNVDFVVKTAGIPLADLVKYPNLFEYSVETRMIPRYRVMEALKSIQVQAQAPTKK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
171	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain