SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56125

Length: 432 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene56125
TCGATTGATAATTCGACATCCGGTTCATGGAAAGGAGGCATCGTGGGCAGAGCTGGTCTTATCGTTTCCCCGAACACTTGTCTGGTTGTCGATTTGAGAGGTCCTAAGAAGATGGGATTCATAACCAATTCGAATGAATTATGCTTTCCATCATTTTCATTAAGATCAGAGTAGGGTCGTCGTCAGTGAGATATTACGGTGAAATCAGCGAGGATAACGACCATAGAAATGCGTACGAGGTGTTGGGAGTGGCGAGCAACTGCAGCGATGTTGAAATCAAAGCAGCATTCAGGAAGCTCGCGAAAAAAACTCATCCGGACCTGCACGTACATTCGGATGCCAATTTATTCTCTCGCCGATTCGTCCGTATTCTGGCCGCATACGAGATATTACCTTTAGAAGCAAAGTTCAGCAGCCATTGGAATCATTAAA

Ace file of the UniGene sp_v2.0_unigene56125 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T4J7_RICCO	-	-	1.0e-10	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	chaperone protein dnaj	-	-	8.93027e-12	70%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM38

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 71 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 97 - 217

Fln protein: MLSIIFIKIRVGSSSVRYYGEISEDNDHRNAYEVLGVASNCSDVEIKAAFRKLAKKTHPDLHVHSDANLFSRRFVRILAAYEILPLEAKFSSHWNH*

Protein Length: 98

Fln nts: TCGATTGATAATTCGACATCCGGTTCATGGAAAGGAGGCATCGTGGGCAGAGCTGGTCTTATCGTTTCCCCGAACACTTGTCTGGTTGTCGATTTGAGAGGTCCTAAGAAGATGGGATTCATAACCAATTCGAATGAATT_-_ATGCTTTCCATCATTTTCATTAAGATCAGAGTAGGGTCGTCGTCAGTGAGATATTACGGTGAAATCAGCGAGGATAACGACCATAGAAATGCGTACGAGGTGTTGGGAGTGGCGAGCAACTGCAGCGATGTTGAAATCAAAGCAGCATTCAGGAAGCTCGCGAAAAAAACTCATCCGGACCTGCACGTACATTCGGATGCCAATTTATTCTCTCGCCGATTCGTCCGTATTCTGGCCGCATACGAGATATTACCTTTAGAAGCAAAGTTCAGCAGCCATTGGAATCATTAAA

Fln Alignment:

AllPineV4_c56204___SEDNDHRNAYEVLGVASNCSDVEIKAAFRKLAKKTHPDLHVHSD-ANLFSRRFVRILAAYEIL---PLEAKFSSH
A9NM38_______________SEEQQSMSLYDLLGIPKNGSLAEIKQAYKQLARRYHPDVCPNPDQSEEYTRRFVQVQEAYEVLSDPPRRALYDQH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain