SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56090

Length: 498 nt

UniGene Fasta

>sp_v2.0_unigene56090
TTGTGCCCAACATAATTCTGACCAATACCCTTATGAACATGTATGCCAAGCTAGGTAGCTTGGCTGACGCACGTAAATTGTTTGACGAAATGCTTCATCGAGATACCTGCTCTTGGAATACGCTAATCACATCGTATTCTCGCCACGGGCCTGCAGAAGAAGCGTTGCAGCTCTTTCACCAGATGCAGAGATCGATTTTCCGGCCTGACCGCTTCACTTATGCCAGCGTTCTCTCGGCTTGTGCCAAGCTGGGAGCTCTAGAAGAGGGCATCGAGATTCACCAAGAAATAGTTAGAAGCCAGTGCCAGATTTATGGTTTTGTAGAGAGTGCCCTAGTAGATTTGTATGCAAAATGTGGGAGAATAGAGAAGGCTCGAGAATTGTTTGACAGAATGTCTAAACGAGACACTGCCTTGTGGAACATCATGATAGCTGCGTATGGAAAGAAGGGACTTGTTGATAAAGCTTTCAATCTTTTCCAAGAAATTTCCAAGAGAG

Ace file of the UniGene sp_v2.0_unigene56090

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 77 n=1 Tax=Funaria hygrometrica RepID=F5CAE2_FUNHY	-	-	5.0e-32	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	at3g62890-like protein	-	-	1.25865e-41	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 85 aas, your sequence is shorter than subject: 165 - 394

Fln protein: VPNIILTNTLMNMYAKLGSLADARKLFDEMLHRDTCSWNTLITSYSRHGPAEEALQLFHQMQRSIFRPDRFTYASVLSACAKLGALEEGIEIHQEIVRSQCQIYGFVESALVDLYAKCGRIEKARELFDRMSKRDTALWNIMIAAYGKKGLVDKAFNLFQEISKR

Protein Length: 166

Fln nts: TTGTGCCCAACATAATTCTGACCAATACCCTTATGAACATGTATGCCAAGCTAGGTAGCTTGGCTGACGCACGTAAATTGTTTGACGAAATGCTTCATCGAGATACCTGCTCTTGGAATACGCTAATCACATCGTATTCTCGCCACGGGCCTGCAGAAGAAGCGTTGCAGCTCTTTCACCAGATGCAGAGATCGATTTTCCGGCCTGACCGCTTCACTTATGCCAGCGTTCTCTCGGCTTGTGCCAAGCTGGGAGCTCTAGAAGAGGGCATCGAGATTCACCAAGAAATAGTTAGAAGCCAGTGCCAGATTTATGGTTTTGTAGAGAGTGCCCTAGTAGATTTGTATGCAAAATGTGGGAGAATAGAGAAGGCTCGAGAATTGTTTGACAGAATGTCTAAACGAGACACTGCCTTGTGGAACATCATGATAGCTGCGTATGGAAAGAAGGGACTTGTTGATAAAGCTTTCAATCTTTTCCAAGAAATTTCCAAGAGAG

Fln Alignment:

AllPineV4_c56165___NIILTNTLMNMYAKLGSLADARKLFDEMLHRDTCSWNTLITSYSRHGPAEEALQLFHQMQRSIFRPDRFTYASVLSACAKLGALEEGIEIHQEIVRSQCQIYGFVESALVDLYAKCGRIEKARELFDRMSKRDTALWNIMIAAYGKKGLVDKAFNLFQEI
B8LKN6_______________DVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain